STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_2959KEGG: bpy:Bphyt_2133 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Nhal_2958
KEGG: cti:RALTA_A1539 putative heat-shock chaperone HSP70/DnaK; Belongs to the heat shock protein 70 family.
 
     0.955
Nhal_2957
KEGG: reu:Reut_A1753 putative chaperone heat-shock protein.
 
     0.946
Nhal_2956
PFAM: protein of unknown function DUF72; KEGG: nis:NIS_1306 hypothetical protein.
       0.721
Nhal_2954
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sfu:Sfum_2727 cobalamin synthesis protein, P47K.
       0.574
rtcB-2
PFAM: protein of unknown function UPF0027; KEGG: sfu:Sfum_2726 protein of unknown function UPF0027; Belongs to the RtcB family.
       0.574
Nhal_2953
PFAM: protein of unknown function DUF101; KEGG: sfu:Sfum_2728 protein of unknown function DUF101.
       0.539
Nhal_2960
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: noc:Noc_0982 geranylgeranyl reductase.
       0.538
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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