STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_3133KEGG: noc:Noc_1625 putative lipoprotein. (253 aa)    
Predicted Functional Partners:
Nhal_3134
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_1624 signal transduction histidine kinase.
 
    0.792
Nhal_1176
PFAM: putative thiol-disulphide oxidoreductase DCC; SMART: HTTM domain protein; KEGG: noc:Noc_2136 hypothetical protein.
  
     0.737
Nhal_0672
KEGG: noc:Noc_2505 hypothetical protein.
  
     0.728
Nhal_0644
KEGG: noc:Noc_2529 hypothetical protein.
  
     0.706
Nhal_1368
KEGG: noc:Noc_1584 hypothetical protein.
  
     0.702
Nhal_2591
KEGG: noc:Noc_1224 hypothetical protein.
  
     0.684
Nhal_2026
KEGG: noc:Noc_1371 hypothetical protein.
  
     0.619
Nhal_3279
PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein.
  
     0.610
Nhal_0677
TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit B; PFAM: Ammonia monooxygenase/methane monooxygenase subunit B; KEGG: noc:Noc_2501 monooxygenase subunit B protein.
  
     0.600
Nhal_2066
PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: noc:Noc_1088 MarR family transcriptional regulator.
  
     0.596
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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