Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpmITIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)    
Predicted Functional Partners:
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.999
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: noc:Noc_2260 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.996
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: noc:Noc_2304 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.994
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.994
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: noc:Noc_1669 ribosomal protein S32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.994
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.994
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.994
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: noc:Noc_2640 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.993
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: noc:Noc_2316 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.993
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: noc:Noc_0808 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.993
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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