STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_3279PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein. (412 aa)    
Predicted Functional Partners:
Nhal_0881
PFAM: Abortive infection protein; KEGG: noc:Noc_1193 abortive infection protein.
  
     0.762
Nhal_1232
KEGG: noc:Noc_1751 hypothetical protein.
  
     0.760
Nhal_0644
KEGG: noc:Noc_2529 hypothetical protein.
  
     0.751
Nhal_1109
KEGG: noc:Noc_0915 hypothetical protein.
  
     0.745
Nhal_1176
PFAM: putative thiol-disulphide oxidoreductase DCC; SMART: HTTM domain protein; KEGG: noc:Noc_2136 hypothetical protein.
  
     0.733
Nhal_0677
TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit B; PFAM: Ammonia monooxygenase/methane monooxygenase subunit B; KEGG: noc:Noc_2501 monooxygenase subunit B protein.
  
     0.723
Nhal_2896
KEGG: noc:Noc_1251 hypothetical protein; Belongs to the UPF0753 family.
  
     0.721
Nhal_1295
KEGG: noc:Noc_1304 hypothetical protein.
  
     0.713
Nhal_0672
KEGG: noc:Noc_2505 hypothetical protein.
  
     0.708
Nhal_0676
TIGRFAM: methane monooxygenase/ammonia monooxygenase, subunit A; PFAM: Ammonia monooxygenase/methane monooxygenase subunit A; KEGG: noc:Noc_2502 ammonia monooxygenase.
  
     0.704
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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