STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_3384PFAM: protein of unknown function DUF152; KEGG: noc:Noc_0579 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. (251 aa)    
Predicted Functional Partners:
Nhal_3793
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.846
Nhal_3386
PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0577 glycosyl transferase, group 1.
  
    0.643
Nhal_3385
PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0578 glycosyl transferase family protein.
       0.641
Nhal_3383
TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: xau:Xaut_0218 putative addiction module antidote.
       0.496
Nhal_3381
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: amc:MADE_03478 hypothetical protein.
       0.493
Nhal_3382
TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: lch:Lcho_1579 death-on-curing family protein.
       0.493
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.417
Nhal_3685
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.402
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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