Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nhal_3602PFAM: Radical SAM domain protein; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme, putative. (376 aa)    
Predicted Functional Partners:
Nhal_3603
PFAM: protein of unknown function DUF52; KEGG: mca:MCA0072 hypothetical protein; Belongs to the MEMO1 family.
 
     0.917
Nhal_3604
PFAM: AMMECR1 domain protein; KEGG: mca:MCA0071 hypothetical protein.
 
     0.917
Nhal_0503
PFAM: Rieske [2Fe-2S] domain protein; KEGG: noc:Noc_2849 Rieske (2Fe-2S) protein.
   
  
 0.578
Nhal_0647
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
  
 0.552
Nhal_1352
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: noc:Noc_1582 malic enzyme.
     
 0.502
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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