STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIJ17859.1RNA polymerase subunit sigma; Expressed in late exponential phase; controls the expression of genes coding cell surface proteins involved in chemotaxis, flagellar assembly, and autolysis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (255 aa)    
Predicted Functional Partners:
OIJ22362.1
Flagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
OIJ17831.1
Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
 
 
 0.966
OIJ17844.1
Flagellar motor switch phosphatase FliY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
OIJ17843.1
Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
cheD
Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
  
 0.950
OIJ17830.1
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.949
flgK
Flagellar hook-associated protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
OIJ17838.1
Flagellar hook assembly protein FlgD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.943
OIJ17832.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.938
OIJ17833.1
Flagellar motor switch protein FliG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
Your Current Organism:
Anaerobacillus alkalidiazotrophicus
NCBI taxonomy Id: 472963
Other names: A. alkalidiazotrophicus, Anaerobacillus alkalidiazotrophicus (Sorokin et al. 2008) Zavarzina et al. 2010, Bacillus alkalidiazotrophicus, Bacillus alkalidiazotrophicus Sorokin et al. 2008, DSM 22531, NCCB 100213, UNIQEM U377, strain MS 6
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