ENSNMLP00000001730 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000001730

TXK tyrosine kinase. (550 aa)

Predicted Functional Partners:

ENSNMLP00000038281

0.935

ENSNMLP00000007467

0.891

ENSNMLP00000017382

0.838

ENSNMLP00000010067

0.837

ENSNMLP00000008623

0.833

ENSNMLP00000039562

0.805

ENSNMLP00000013259

0.797

ENSNMLP00000018317

0.793

ENSNMLP00000033544

0.793

ENSNMLP00000039616

0.787

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001730	ENSNMLP00000007467	TXK tyrosine kinase.	annotation not available	0.891
ENSNMLP00000001730	ENSNMLP00000008623	TXK tyrosine kinase.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.833
ENSNMLP00000001730	ENSNMLP00000010067	TXK tyrosine kinase.	annotation not available	0.837
ENSNMLP00000001730	ENSNMLP00000013259	TXK tyrosine kinase.	Phosphoinositide-3-kinase, regulatory subunit 5.	0.797
ENSNMLP00000001730	ENSNMLP00000017382	TXK tyrosine kinase.	Si:rp71-17i16.5.	0.838
ENSNMLP00000001730	ENSNMLP00000018317	TXK tyrosine kinase.	MET proto-oncogene, receptor tyrosine kinase.	0.793
ENSNMLP00000001730	ENSNMLP00000033544	TXK tyrosine kinase.	Macrophage stimulating 1 receptor a.	0.793
ENSNMLP00000001730	ENSNMLP00000038281	TXK tyrosine kinase.	annotation not available	0.935
ENSNMLP00000001730	ENSNMLP00000039562	TXK tyrosine kinase.	annotation not available	0.805
ENSNMLP00000001730	ENSNMLP00000039616	TXK tyrosine kinase.	GRB2 related adaptor protein 2a.	0.787
ENSNMLP00000007467	ENSNMLP00000001730	annotation not available	TXK tyrosine kinase.	0.891
ENSNMLP00000007467	ENSNMLP00000008623	annotation not available	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.825
ENSNMLP00000007467	ENSNMLP00000018317	annotation not available	MET proto-oncogene, receptor tyrosine kinase.	0.920
ENSNMLP00000007467	ENSNMLP00000033544	annotation not available	Macrophage stimulating 1 receptor a.	0.920
ENSNMLP00000007467	ENSNMLP00000039562	annotation not available	annotation not available	0.920
ENSNMLP00000008623	ENSNMLP00000001730	Inhibitor of nuclear factor kappa B kinase subunit beta.	TXK tyrosine kinase.	0.833
ENSNMLP00000008623	ENSNMLP00000007467	Inhibitor of nuclear factor kappa B kinase subunit beta.	annotation not available	0.825
ENSNMLP00000008623	ENSNMLP00000010067	Inhibitor of nuclear factor kappa B kinase subunit beta.	annotation not available	0.939
ENSNMLP00000008623	ENSNMLP00000017382	Inhibitor of nuclear factor kappa B kinase subunit beta.	Si:rp71-17i16.5.	0.412
ENSNMLP00000008623	ENSNMLP00000039616	Inhibitor of nuclear factor kappa B kinase subunit beta.	GRB2 related adaptor protein 2a.	0.455