ENSNMLP00000001909 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000001909

annotation not available (177 aa)

Predicted Functional Partners:

ENSNMLP00000035162

0.829

ENSNMLP00000036153

0.776

ENSNMLP00000042915

0.772

ENSNMLP00000040542

0.749

ENSNMLP00000035165

0.748

ENSNMLP00000023206

0.738

ENSNMLP00000031635

0.717

ENSNMLP00000019178

0.715

ENSNMLP00000019269

0.685

ENSNMLP00000005318

0.683

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001909	ENSNMLP00000005318	annotation not available	annotation not available	0.683
ENSNMLP00000001909	ENSNMLP00000019178	annotation not available	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.715
ENSNMLP00000001909	ENSNMLP00000019269	annotation not available	annotation not available	0.685
ENSNMLP00000001909	ENSNMLP00000023206	annotation not available	annotation not available	0.738
ENSNMLP00000001909	ENSNMLP00000031635	annotation not available	annotation not available	0.717
ENSNMLP00000001909	ENSNMLP00000035162	annotation not available	annotation not available	0.829
ENSNMLP00000001909	ENSNMLP00000035165	annotation not available	annotation not available	0.748
ENSNMLP00000001909	ENSNMLP00000036153	annotation not available	Interferon regulatory factor 3.	0.776
ENSNMLP00000001909	ENSNMLP00000040542	annotation not available	annotation not available	0.749
ENSNMLP00000001909	ENSNMLP00000042915	annotation not available	annotation not available	0.772
ENSNMLP00000005318	ENSNMLP00000001909	annotation not available	annotation not available	0.683
ENSNMLP00000005318	ENSNMLP00000019178	annotation not available	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.978
ENSNMLP00000005318	ENSNMLP00000042915	annotation not available	annotation not available	0.797
ENSNMLP00000019178	ENSNMLP00000001909	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	annotation not available	0.715
ENSNMLP00000019178	ENSNMLP00000005318	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	annotation not available	0.978
ENSNMLP00000019178	ENSNMLP00000036153	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	Interferon regulatory factor 3.	0.615
ENSNMLP00000019178	ENSNMLP00000042915	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	annotation not available	0.863
ENSNMLP00000019269	ENSNMLP00000001909	annotation not available	annotation not available	0.685
ENSNMLP00000019269	ENSNMLP00000023206	annotation not available	annotation not available	0.965
ENSNMLP00000019269	ENSNMLP00000031635	annotation not available	annotation not available	0.891