ENSNMLP00000002438 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000002438

Si:ch211-149b19.3. (147 aa)

Predicted Functional Partners:

ENSNMLP00000010052

0.882

ENSNMLP00000004533

0.863

ENSNMLP00000037717

0.862

ENSNMLP00000021544

0.776

ENSNMLP00000007854

0.772

ENSNMLP00000020053

0.772

ENSNMLP00000032177

0.772

ENSNMLP00000002426

0.734

ENSNMLP00000040815

0.715

ENSNMLP00000003307

0.677

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000002426	ENSNMLP00000002438	annotation not available	Si:ch211-149b19.3.	0.734
ENSNMLP00000002426	ENSNMLP00000003307	annotation not available	Mediator complex subunit 22.	0.677
ENSNMLP00000002426	ENSNMLP00000004533	annotation not available	Branched chain keto acid dehydrogenase E1 subunit alpha.	0.863
ENSNMLP00000002426	ENSNMLP00000007854	annotation not available	Mediator complex subunit 14.	0.772
ENSNMLP00000002426	ENSNMLP00000010052	annotation not available	Branched chain keto acid dehydrogenase E1 subunit beta.	0.882
ENSNMLP00000002426	ENSNMLP00000020053	annotation not available	Mediator complex subunit 7.	0.772
ENSNMLP00000002426	ENSNMLP00000021544	annotation not available	Mediator complex subunit 31.	0.776
ENSNMLP00000002426	ENSNMLP00000032177	annotation not available	Mediator complex subunit 21.	0.772
ENSNMLP00000002426	ENSNMLP00000037717	annotation not available	Dihydrolipoamide branched chain transacylase E2.	0.862
ENSNMLP00000002426	ENSNMLP00000040815	annotation not available	Mediator complex subunit 6.	0.715
ENSNMLP00000002438	ENSNMLP00000002426	Si:ch211-149b19.3.	annotation not available	0.734
ENSNMLP00000002438	ENSNMLP00000003307	Si:ch211-149b19.3.	Mediator complex subunit 22.	0.677
ENSNMLP00000002438	ENSNMLP00000004533	Si:ch211-149b19.3.	Branched chain keto acid dehydrogenase E1 subunit alpha.	0.863
ENSNMLP00000002438	ENSNMLP00000007854	Si:ch211-149b19.3.	Mediator complex subunit 14.	0.772
ENSNMLP00000002438	ENSNMLP00000010052	Si:ch211-149b19.3.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.882
ENSNMLP00000002438	ENSNMLP00000020053	Si:ch211-149b19.3.	Mediator complex subunit 7.	0.772
ENSNMLP00000002438	ENSNMLP00000021544	Si:ch211-149b19.3.	Mediator complex subunit 31.	0.776
ENSNMLP00000002438	ENSNMLP00000032177	Si:ch211-149b19.3.	Mediator complex subunit 21.	0.772
ENSNMLP00000002438	ENSNMLP00000037717	Si:ch211-149b19.3.	Dihydrolipoamide branched chain transacylase E2.	0.862
ENSNMLP00000002438	ENSNMLP00000040815	Si:ch211-149b19.3.	Mediator complex subunit 6.	0.715