ENSNMLP00000003981 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000003981

Tubulin folding cofactor B. (249 aa)

Predicted Functional Partners:

ENSNMLP00000025041

0.769

ENSNMLP00000019903

0.737

ENSNMLP00000000093

0.713

ENSNMLP00000031987

0.713

ENSNMLP00000031266

0.685

GAN

0.684

ENSNMLP00000044157

0.637

ENSNMLP00000033185

0.628

ENSNMLP00000034229

0.563

ENSNMLP00000027252

0.549

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000000093	ENSNMLP00000003981	ENSNMLP00000000093	ENSNMLP00000003981	annotation not available	Tubulin folding cofactor B.	0.713
ENSNMLP00000003981	ENSNMLP00000000093	ENSNMLP00000003981	ENSNMLP00000000093	Tubulin folding cofactor B.	annotation not available	0.713
ENSNMLP00000003981	ENSNMLP00000019903	ENSNMLP00000003981	ENSNMLP00000019903	Tubulin folding cofactor B.	Si:ch211-131k2.3.	0.737
ENSNMLP00000003981	ENSNMLP00000025041	ENSNMLP00000003981	ENSNMLP00000025041	Tubulin folding cofactor B.	Tubulin folding cofactor D.	0.769
ENSNMLP00000003981	ENSNMLP00000027252	ENSNMLP00000003981	ENSNMLP00000027252	Tubulin folding cofactor B.	Protein phosphatase 1, regulatory (inhibitor) subunit 14Ba.	0.549
ENSNMLP00000003981	ENSNMLP00000031266	ENSNMLP00000003981	ENSNMLP00000031266	Tubulin folding cofactor B.	Dynactin 3 (p22).	0.685
ENSNMLP00000003981	ENSNMLP00000031987	ENSNMLP00000003981	ENSNMLP00000031987	Tubulin folding cofactor B.	Trafficking protein particle complex 4.	0.713
ENSNMLP00000003981	ENSNMLP00000033185	ENSNMLP00000003981	ENSNMLP00000033185	Tubulin folding cofactor B.	ADP-ribosylation factor-like 2.	0.628
ENSNMLP00000003981	ENSNMLP00000034229	ENSNMLP00000003981	ENSNMLP00000034229	Tubulin folding cofactor B.	Tubulin folding cofactor C.	0.563
ENSNMLP00000003981	ENSNMLP00000044157	ENSNMLP00000003981	ENSNMLP00000044157	Tubulin folding cofactor B.	Tubulin cofactor a.	0.637
ENSNMLP00000003981	GAN	ENSNMLP00000003981	ENSNMLP00000040885	Tubulin folding cofactor B.	Gigaxonin.	0.684
ENSNMLP00000019903	ENSNMLP00000003981	ENSNMLP00000019903	ENSNMLP00000003981	Si:ch211-131k2.3.	Tubulin folding cofactor B.	0.737
ENSNMLP00000025041	ENSNMLP00000003981	ENSNMLP00000025041	ENSNMLP00000003981	Tubulin folding cofactor D.	Tubulin folding cofactor B.	0.769
ENSNMLP00000025041	ENSNMLP00000033185	ENSNMLP00000025041	ENSNMLP00000033185	Tubulin folding cofactor D.	ADP-ribosylation factor-like 2.	0.974
ENSNMLP00000025041	ENSNMLP00000034229	ENSNMLP00000025041	ENSNMLP00000034229	Tubulin folding cofactor D.	Tubulin folding cofactor C.	0.931
ENSNMLP00000025041	ENSNMLP00000044157	ENSNMLP00000025041	ENSNMLP00000044157	Tubulin folding cofactor D.	Tubulin cofactor a.	0.760
ENSNMLP00000027252	ENSNMLP00000003981	ENSNMLP00000027252	ENSNMLP00000003981	Protein phosphatase 1, regulatory (inhibitor) subunit 14Ba.	Tubulin folding cofactor B.	0.549
ENSNMLP00000031266	ENSNMLP00000003981	ENSNMLP00000031266	ENSNMLP00000003981	Dynactin 3 (p22).	Tubulin folding cofactor B.	0.685
ENSNMLP00000031987	ENSNMLP00000003981	ENSNMLP00000031987	ENSNMLP00000003981	Trafficking protein particle complex 4.	Tubulin folding cofactor B.	0.713
ENSNMLP00000033185	ENSNMLP00000003981	ENSNMLP00000033185	ENSNMLP00000003981	ADP-ribosylation factor-like 2.	Tubulin folding cofactor B.	0.628