ENSNMLP00000004660 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000004660

T-box transcription factor Ta. (421 aa)

Predicted Functional Partners:

ENSNMLP00000011560

0.791

ENSNMLP00000010494

0.755

ENSNMLP00000038470

0.677

ENSNMLP00000010948

0.670

ENSNMLP00000022193

0.663

ENSNMLP00000017215

0.659

ENSNMLP00000017685

0.645

ENSNMLP00000044570

0.643

ENSNMLP00000040898

0.638

ENSNMLP00000036393

0.633

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000004660	ENSNMLP00000010494	T-box transcription factor Ta.	POU domain, class 5, transcription factor 3.	0.755
ENSNMLP00000004660	ENSNMLP00000010948	T-box transcription factor Ta.	Mix paired-like homeobox.	0.670
ENSNMLP00000004660	ENSNMLP00000011560	T-box transcription factor Ta.	Notochord homeobox.	0.791
ENSNMLP00000004660	ENSNMLP00000017215	T-box transcription factor Ta.	Snail family zinc finger 2.	0.659
ENSNMLP00000004660	ENSNMLP00000017685	T-box transcription factor Ta.	Forkhead box A2.	0.645
ENSNMLP00000004660	ENSNMLP00000022193	T-box transcription factor Ta.	Eomesodermin homolog a.	0.663
ENSNMLP00000004660	ENSNMLP00000036393	T-box transcription factor Ta.	Bone morphogenetic protein 4.	0.633
ENSNMLP00000004660	ENSNMLP00000038470	T-box transcription factor Ta.	Forkhead box H1.	0.677
ENSNMLP00000004660	ENSNMLP00000040898	T-box transcription factor Ta.	Eomesodermin homolog b.	0.638
ENSNMLP00000004660	ENSNMLP00000044570	T-box transcription factor Ta.	T-box brain transcription factor 1b.	0.643
ENSNMLP00000010494	ENSNMLP00000004660	POU domain, class 5, transcription factor 3.	T-box transcription factor Ta.	0.755
ENSNMLP00000010494	ENSNMLP00000010948	POU domain, class 5, transcription factor 3.	Mix paired-like homeobox.	0.420
ENSNMLP00000010494	ENSNMLP00000017685	POU domain, class 5, transcription factor 3.	Forkhead box A2.	0.494
ENSNMLP00000010494	ENSNMLP00000022193	POU domain, class 5, transcription factor 3.	Eomesodermin homolog a.	0.553
ENSNMLP00000010494	ENSNMLP00000038470	POU domain, class 5, transcription factor 3.	Forkhead box H1.	0.715
ENSNMLP00000010494	ENSNMLP00000040898	POU domain, class 5, transcription factor 3.	Eomesodermin homolog b.	0.480
ENSNMLP00000010494	ENSNMLP00000044570	POU domain, class 5, transcription factor 3.	T-box brain transcription factor 1b.	0.503
ENSNMLP00000010948	ENSNMLP00000004660	Mix paired-like homeobox.	T-box transcription factor Ta.	0.670
ENSNMLP00000010948	ENSNMLP00000010494	Mix paired-like homeobox.	POU domain, class 5, transcription factor 3.	0.420
ENSNMLP00000010948	ENSNMLP00000022193	Mix paired-like homeobox.	Eomesodermin homolog a.	0.584