ENSNMLP00000005284 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000005284

Multiple EGF-like-domains 11. (984 aa)

Predicted Functional Partners:

SCUBE1

0.920

ENSNMLP00000002782

0.697

ENSNMLP00000028760

0.638

LAMA2

0.633

ENSNMLP00000041567

0.633

ENSNMLP00000000580

0.631

ENSNMLP00000008119

0.631

ENSNMLP00000031252

0.624

ENSNMLP00000021861

0.618

ENSNMLP00000020215

0.574

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000000580	ENSNMLP00000005284	ENSNMLP00000000580	ENSNMLP00000005284	annotation not available	Multiple EGF-like-domains 11.	0.631
ENSNMLP00000000580	ENSNMLP00000031252	ENSNMLP00000000580	ENSNMLP00000031252	annotation not available	Integrin, alpha 6a.	0.950
ENSNMLP00000000580	ENSNMLP00000041567	ENSNMLP00000000580	ENSNMLP00000041567	annotation not available	annotation not available	0.959
ENSNMLP00000000580	LAMA2	ENSNMLP00000000580	ENSNMLP00000034412	annotation not available	Laminin subunit alpha 2.	0.611
ENSNMLP00000002782	ENSNMLP00000005284	ENSNMLP00000002782	ENSNMLP00000005284	GULP PTB domain containing engulfment adaptor 1a.	Multiple EGF-like-domains 11.	0.697
ENSNMLP00000005284	ENSNMLP00000000580	ENSNMLP00000005284	ENSNMLP00000000580	Multiple EGF-like-domains 11.	annotation not available	0.631
ENSNMLP00000005284	ENSNMLP00000002782	ENSNMLP00000005284	ENSNMLP00000002782	Multiple EGF-like-domains 11.	GULP PTB domain containing engulfment adaptor 1a.	0.697
ENSNMLP00000005284	ENSNMLP00000008119	ENSNMLP00000005284	ENSNMLP00000008119	Multiple EGF-like-domains 11.	annotation not available	0.631
ENSNMLP00000005284	ENSNMLP00000020215	ENSNMLP00000005284	ENSNMLP00000020215	Multiple EGF-like-domains 11.	annotation not available	0.574
ENSNMLP00000005284	ENSNMLP00000021861	ENSNMLP00000005284	ENSNMLP00000021861	Multiple EGF-like-domains 11.	FAM20A golgi associated secretory pathway pseudokinase.	0.618
ENSNMLP00000005284	ENSNMLP00000028760	ENSNMLP00000005284	ENSNMLP00000028760	Multiple EGF-like-domains 11.	annotation not available	0.638
ENSNMLP00000005284	ENSNMLP00000031252	ENSNMLP00000005284	ENSNMLP00000031252	Multiple EGF-like-domains 11.	Integrin, alpha 6a.	0.624
ENSNMLP00000005284	ENSNMLP00000041567	ENSNMLP00000005284	ENSNMLP00000041567	Multiple EGF-like-domains 11.	annotation not available	0.633
ENSNMLP00000005284	LAMA2	ENSNMLP00000005284	ENSNMLP00000034412	Multiple EGF-like-domains 11.	Laminin subunit alpha 2.	0.633
ENSNMLP00000005284	SCUBE1	ENSNMLP00000005284	ENSNMLP00000034194	Multiple EGF-like-domains 11.	Signal peptide, CUB domain and EGF like domain containing 1.	0.920
ENSNMLP00000008119	ENSNMLP00000005284	ENSNMLP00000008119	ENSNMLP00000005284	annotation not available	Multiple EGF-like-domains 11.	0.631
ENSNMLP00000008119	ENSNMLP00000031252	ENSNMLP00000008119	ENSNMLP00000031252	annotation not available	Integrin, alpha 6a.	0.950
ENSNMLP00000008119	ENSNMLP00000041567	ENSNMLP00000008119	ENSNMLP00000041567	annotation not available	annotation not available	0.927
ENSNMLP00000008119	LAMA2	ENSNMLP00000008119	ENSNMLP00000034412	annotation not available	Laminin subunit alpha 2.	0.611
ENSNMLP00000020215	ENSNMLP00000005284	ENSNMLP00000020215	ENSNMLP00000005284	annotation not available	Multiple EGF-like-domains 11.	0.574