ENSNMLP00000005951 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000005951

Family with sequence similarity 126 member A. (502 aa)

Predicted Functional Partners:

ENSNMLP00000005286

0.876

ENSNMLP00000039880

0.860

ENSNMLP00000030271

0.540

ENSNMLP00000001932

0.527

ENSNMLP00000023572

0.516

ENSNMLP00000040176

0.513

ENSNMLP00000010692

0.504

ENSNMLP00000037105

0.499

ENSNMLP00000033758

0.485

ENSNMLP00000016429

0.474

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001932	ENSNMLP00000005951	Sedoheptulokinase.	Family with sequence similarity 126 member A.	0.527
ENSNMLP00000005286	ENSNMLP00000005951	Tetratricopeptide repeat domain 7B.	Family with sequence similarity 126 member A.	0.876
ENSNMLP00000005286	ENSNMLP00000010692	Tetratricopeptide repeat domain 7B.	EFR3 homolog Bb (S. cerevisiae).	0.860
ENSNMLP00000005286	ENSNMLP00000030271	Tetratricopeptide repeat domain 7B.	EFR3 homolog A (S. cerevisiae).	0.802
ENSNMLP00000005286	ENSNMLP00000037105	Tetratricopeptide repeat domain 7B.	Transmembrane protein 150Aa.	0.497
ENSNMLP00000005951	ENSNMLP00000001932	Family with sequence similarity 126 member A.	Sedoheptulokinase.	0.527
ENSNMLP00000005951	ENSNMLP00000005286	Family with sequence similarity 126 member A.	Tetratricopeptide repeat domain 7B.	0.876
ENSNMLP00000005951	ENSNMLP00000010692	Family with sequence similarity 126 member A.	EFR3 homolog Bb (S. cerevisiae).	0.504
ENSNMLP00000005951	ENSNMLP00000016429	Family with sequence similarity 126 member A.	Phosphorylase kinase, beta.	0.474
ENSNMLP00000005951	ENSNMLP00000023572	Family with sequence similarity 126 member A.	annotation not available	0.516
ENSNMLP00000005951	ENSNMLP00000030271	Family with sequence similarity 126 member A.	EFR3 homolog A (S. cerevisiae).	0.540
ENSNMLP00000005951	ENSNMLP00000033758	Family with sequence similarity 126 member A.	Phosphorylase kinase, alpha 2 (liver).	0.485
ENSNMLP00000005951	ENSNMLP00000037105	Family with sequence similarity 126 member A.	Transmembrane protein 150Aa.	0.499
ENSNMLP00000005951	ENSNMLP00000039880	Family with sequence similarity 126 member A.	Tetratricopeptide repeat domain 7A.	0.860
ENSNMLP00000005951	ENSNMLP00000040176	Family with sequence similarity 126 member A.	Zinc finger, CCHC domain containing 24.	0.513
ENSNMLP00000010692	ENSNMLP00000005286	EFR3 homolog Bb (S. cerevisiae).	Tetratricopeptide repeat domain 7B.	0.860
ENSNMLP00000010692	ENSNMLP00000005951	EFR3 homolog Bb (S. cerevisiae).	Family with sequence similarity 126 member A.	0.504
ENSNMLP00000010692	ENSNMLP00000039880	EFR3 homolog Bb (S. cerevisiae).	Tetratricopeptide repeat domain 7A.	0.802
ENSNMLP00000016429	ENSNMLP00000005951	Phosphorylase kinase, beta.	Family with sequence similarity 126 member A.	0.474
ENSNMLP00000016429	ENSNMLP00000033758	Phosphorylase kinase, beta.	Phosphorylase kinase, alpha 2 (liver).	0.925