ENSNMLP00000005966 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000005966

annotation not available (147 aa)

Predicted Functional Partners:

ENSNMLP00000033431

0.998

ENSNMLP00000001704

0.961

ENSNMLP00000006898

0.958

ENSNMLP00000038463

0.949

ENSNMLP00000001079

0.942

ENSNMLP00000013403

0.933

ENSNMLP00000008103

0.920

ENSNMLP00000013790

0.919

ENSNMLP00000017213

0.914

ENSNMLP00000018040

0.911

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001079	ENSNMLP00000001704	Ribosomal protein S27a.	Ubiquitin B.	0.997
ENSNMLP00000001079	ENSNMLP00000005966	Ribosomal protein S27a.	annotation not available	0.942
ENSNMLP00000001079	ENSNMLP00000006898	Ribosomal protein S27a.	APC11 anaphase promoting complex subunit 11 homolog (yeast).	0.781
ENSNMLP00000001079	ENSNMLP00000013403	Ribosomal protein S27a.	STIP1 homology and U-Box containing protein 1.	0.788
ENSNMLP00000001079	ENSNMLP00000013790	Ribosomal protein S27a.	Ring-box 1, E3 ubiquitin protein ligase.	0.967
ENSNMLP00000001079	ENSNMLP00000017213	Ribosomal protein S27a.	Ubiquitin-conjugating enzyme E2 variant 2.	0.978
ENSNMLP00000001079	ENSNMLP00000018040	Ribosomal protein S27a.	annotation not available	0.993
ENSNMLP00000001079	ENSNMLP00000033431	Ribosomal protein S27a.	Ubiquitin-conjugating enzyme E2 variant 1.	0.999
ENSNMLP00000001079	ENSNMLP00000038463	Ribosomal protein S27a.	Ubiquitin-like modifier activating enzyme 7.	0.997
ENSNMLP00000001704	ENSNMLP00000001079	Ubiquitin B.	Ribosomal protein S27a.	0.997
ENSNMLP00000001704	ENSNMLP00000005966	Ubiquitin B.	annotation not available	0.961
ENSNMLP00000001704	ENSNMLP00000006898	Ubiquitin B.	APC11 anaphase promoting complex subunit 11 homolog (yeast).	0.964
ENSNMLP00000001704	ENSNMLP00000013403	Ubiquitin B.	STIP1 homology and U-Box containing protein 1.	0.796
ENSNMLP00000001704	ENSNMLP00000013790	Ubiquitin B.	Ring-box 1, E3 ubiquitin protein ligase.	0.965
ENSNMLP00000001704	ENSNMLP00000017213	Ubiquitin B.	Ubiquitin-conjugating enzyme E2 variant 2.	0.981
ENSNMLP00000001704	ENSNMLP00000018040	Ubiquitin B.	annotation not available	0.986
ENSNMLP00000001704	ENSNMLP00000033431	Ubiquitin B.	Ubiquitin-conjugating enzyme E2 variant 1.	0.983
ENSNMLP00000001704	ENSNMLP00000038463	Ubiquitin B.	Ubiquitin-like modifier activating enzyme 7.	0.998
ENSNMLP00000005966	ENSNMLP00000001079	annotation not available	Ribosomal protein S27a.	0.942
ENSNMLP00000005966	ENSNMLP00000001704	annotation not available	Ubiquitin B.	0.961