ENSNMLP00000006951 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000006951

ZPR1 zinc finger. (418 aa)

Predicted Functional Partners:

ENSNMLP00000032051

0.785

ENSNMLP00000000819

0.725

ENSNMLP00000001476

0.725

EEF1A1

0.725

EEF1A1-2

0.725

ENSNMLP00000041141

0.725

ENSNMLP00000000378

0.720

ENSNMLP00000003327

0.698

ENSNMLP00000037966

0.698

ENSNMLP00000013206

0.632

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1A1	ENSNMLP00000000819	ENSNMLP00000009144	ENSNMLP00000000819	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.824
EEF1A1	ENSNMLP00000006951	ENSNMLP00000009144	ENSNMLP00000006951	Eukaryotic translation elongation factor 1 alpha 1.	ZPR1 zinc finger.	0.725
EEF1A1	ENSNMLP00000041141	ENSNMLP00000009144	ENSNMLP00000041141	Eukaryotic translation elongation factor 1 alpha 1.	Si:dkey-37o8.1.	0.820
EEF1A1-2	ENSNMLP00000000819	ENSNMLP00000035843	ENSNMLP00000000819	Eukaryotic translation elongation factor 1 alpha 1.	annotation not available	0.823
EEF1A1-2	ENSNMLP00000006951	ENSNMLP00000035843	ENSNMLP00000006951	Eukaryotic translation elongation factor 1 alpha 1.	ZPR1 zinc finger.	0.725
EEF1A1-2	ENSNMLP00000041141	ENSNMLP00000035843	ENSNMLP00000041141	Eukaryotic translation elongation factor 1 alpha 1.	Si:dkey-37o8.1.	0.820
ENSNMLP00000000378	ENSNMLP00000006951	ENSNMLP00000000378	ENSNMLP00000006951	BUD13 homolog.	ZPR1 zinc finger.	0.720
ENSNMLP00000000819	EEF1A1	ENSNMLP00000000819	ENSNMLP00000009144	annotation not available	Eukaryotic translation elongation factor 1 alpha 1.	0.824
ENSNMLP00000000819	EEF1A1-2	ENSNMLP00000000819	ENSNMLP00000035843	annotation not available	Eukaryotic translation elongation factor 1 alpha 1.	0.823
ENSNMLP00000000819	ENSNMLP00000006951	ENSNMLP00000000819	ENSNMLP00000006951	annotation not available	ZPR1 zinc finger.	0.725
ENSNMLP00000000819	ENSNMLP00000041141	ENSNMLP00000000819	ENSNMLP00000041141	annotation not available	Si:dkey-37o8.1.	0.838
ENSNMLP00000001476	ENSNMLP00000006951	ENSNMLP00000001476	ENSNMLP00000006951	Ribosome production factor 2 homolog.	ZPR1 zinc finger.	0.725
ENSNMLP00000001476	ENSNMLP00000032051	ENSNMLP00000001476	ENSNMLP00000032051	Ribosome production factor 2 homolog.	NOC2-like nucleolar associated transcriptional repressor.	0.999
ENSNMLP00000003327	ENSNMLP00000006951	ENSNMLP00000003327	ENSNMLP00000006951	annotation not available	ZPR1 zinc finger.	0.698
ENSNMLP00000006951	EEF1A1	ENSNMLP00000006951	ENSNMLP00000009144	ZPR1 zinc finger.	Eukaryotic translation elongation factor 1 alpha 1.	0.725
ENSNMLP00000006951	EEF1A1-2	ENSNMLP00000006951	ENSNMLP00000035843	ZPR1 zinc finger.	Eukaryotic translation elongation factor 1 alpha 1.	0.725
ENSNMLP00000006951	ENSNMLP00000000378	ENSNMLP00000006951	ENSNMLP00000000378	ZPR1 zinc finger.	BUD13 homolog.	0.720
ENSNMLP00000006951	ENSNMLP00000000819	ENSNMLP00000006951	ENSNMLP00000000819	ZPR1 zinc finger.	annotation not available	0.725
ENSNMLP00000006951	ENSNMLP00000001476	ENSNMLP00000006951	ENSNMLP00000001476	ZPR1 zinc finger.	Ribosome production factor 2 homolog.	0.725
ENSNMLP00000006951	ENSNMLP00000003327	ENSNMLP00000006951	ENSNMLP00000003327	ZPR1 zinc finger.	annotation not available	0.698