ENSNMLP00000008924 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000008924

annotation not available (230 aa)

Predicted Functional Partners:

ENSNMLP00000007714

0.720

ENSNMLP00000000420

0.582

ENSNMLP00000035407

0.560

ENSNMLP00000029936

0.493

ENSNMLP00000000751

0.450

ENSNMLP00000023788

0.411

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000420	ENSNMLP00000007714	Arginase 2.	Malate synthase-like.	0.610
ENSNMLP00000000420	ENSNMLP00000008924	Arginase 2.	annotation not available	0.582
ENSNMLP00000000420	ENSNMLP00000029936	Arginase 2.	Agmatine ureohydrolase (agmatinase).	0.909
ENSNMLP00000000751	ENSNMLP00000007714	Trehalase (brush-border membrane glycoprotein).	Malate synthase-like.	0.566
ENSNMLP00000000751	ENSNMLP00000008924	Trehalase (brush-border membrane glycoprotein).	annotation not available	0.450
ENSNMLP00000000751	ENSNMLP00000023788	Trehalase (brush-border membrane glycoprotein).	Yip1 domain family, member 6.	0.987
ENSNMLP00000000751	ENSNMLP00000035407	Trehalase (brush-border membrane glycoprotein).	Catalase.	0.913
ENSNMLP00000007714	ENSNMLP00000000420	Malate synthase-like.	Arginase 2.	0.610
ENSNMLP00000007714	ENSNMLP00000000751	Malate synthase-like.	Trehalase (brush-border membrane glycoprotein).	0.566
ENSNMLP00000007714	ENSNMLP00000008924	Malate synthase-like.	annotation not available	0.720
ENSNMLP00000007714	ENSNMLP00000023788	Malate synthase-like.	Yip1 domain family, member 6.	0.634
ENSNMLP00000007714	ENSNMLP00000029936	Malate synthase-like.	Agmatine ureohydrolase (agmatinase).	0.510
ENSNMLP00000007714	ENSNMLP00000035407	Malate synthase-like.	Catalase.	0.791
ENSNMLP00000008924	ENSNMLP00000000420	annotation not available	Arginase 2.	0.582
ENSNMLP00000008924	ENSNMLP00000000751	annotation not available	Trehalase (brush-border membrane glycoprotein).	0.450
ENSNMLP00000008924	ENSNMLP00000007714	annotation not available	Malate synthase-like.	0.720
ENSNMLP00000008924	ENSNMLP00000023788	annotation not available	Yip1 domain family, member 6.	0.411
ENSNMLP00000008924	ENSNMLP00000029936	annotation not available	Agmatine ureohydrolase (agmatinase).	0.493
ENSNMLP00000008924	ENSNMLP00000035407	annotation not available	Catalase.	0.560
ENSNMLP00000023788	ENSNMLP00000000751	Yip1 domain family, member 6.	Trehalase (brush-border membrane glycoprotein).	0.987