ENSNMLP00000008995 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000008995

annotation not available (396 aa)

Predicted Functional Partners:

ENSNMLP00000040462

0.746

ENSNMLP00000034748

0.713

ENSNMLP00000001086

0.698

ENSNMLP00000003087

0.692

ENSNMLP00000004192

0.692

ENSNMLP00000007054

0.689

ENSNMLP00000036231

0.660

ENSNMLP00000017318

0.653

ENSNMLP00000021238

0.653

ENSNMLP00000024200

0.652

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001086	ENSNMLP00000003087	SPG7 matrix AAA peptidase subunit, paraplegin.	Single-pass membrane protein with aspartate-rich tail 1b.	0.753
ENSNMLP00000001086	ENSNMLP00000004192	SPG7 matrix AAA peptidase subunit, paraplegin.	Single-pass membrane protein with aspartate-rich tail 1a.	0.753
ENSNMLP00000001086	ENSNMLP00000007054	SPG7 matrix AAA peptidase subunit, paraplegin.	Si:ch1073-174d20.2.	0.934
ENSNMLP00000001086	ENSNMLP00000008995	SPG7 matrix AAA peptidase subunit, paraplegin.	annotation not available	0.698
ENSNMLP00000001086	ENSNMLP00000017318	SPG7 matrix AAA peptidase subunit, paraplegin.	YME1-like 1b.	0.887
ENSNMLP00000001086	ENSNMLP00000021238	SPG7 matrix AAA peptidase subunit, paraplegin.	YME1-like 1a.	0.887
ENSNMLP00000001086	ENSNMLP00000024200	SPG7 matrix AAA peptidase subunit, paraplegin.	Peptidase (mitochondrial processing) beta.	0.835
ENSNMLP00000001086	ENSNMLP00000034748	SPG7 matrix AAA peptidase subunit, paraplegin.	Prohibitin 2b.	0.949
ENSNMLP00000001086	ENSNMLP00000036231	SPG7 matrix AAA peptidase subunit, paraplegin.	Peptidase (mitochondrial processing) alpha.	0.859
ENSNMLP00000001086	ENSNMLP00000040462	SPG7 matrix AAA peptidase subunit, paraplegin.	Prohibitin.	0.963
ENSNMLP00000003087	ENSNMLP00000001086	Single-pass membrane protein with aspartate-rich tail 1b.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.753
ENSNMLP00000003087	ENSNMLP00000007054	Single-pass membrane protein with aspartate-rich tail 1b.	Si:ch1073-174d20.2.	0.799
ENSNMLP00000003087	ENSNMLP00000008995	Single-pass membrane protein with aspartate-rich tail 1b.	annotation not available	0.692
ENSNMLP00000003087	ENSNMLP00000017318	Single-pass membrane protein with aspartate-rich tail 1b.	YME1-like 1b.	0.627
ENSNMLP00000003087	ENSNMLP00000021238	Single-pass membrane protein with aspartate-rich tail 1b.	YME1-like 1a.	0.627
ENSNMLP00000003087	ENSNMLP00000024200	Single-pass membrane protein with aspartate-rich tail 1b.	Peptidase (mitochondrial processing) beta.	0.658
ENSNMLP00000003087	ENSNMLP00000034748	Single-pass membrane protein with aspartate-rich tail 1b.	Prohibitin 2b.	0.644
ENSNMLP00000003087	ENSNMLP00000036231	Single-pass membrane protein with aspartate-rich tail 1b.	Peptidase (mitochondrial processing) alpha.	0.659
ENSNMLP00000003087	ENSNMLP00000040462	Single-pass membrane protein with aspartate-rich tail 1b.	Prohibitin.	0.646
ENSNMLP00000004192	ENSNMLP00000001086	Single-pass membrane protein with aspartate-rich tail 1a.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.753