ENSNMLP00000009275 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000009275

RNA binding motif protein X-linked. (202 aa)

Predicted Functional Partners:

ENSNMLP00000017533

0.966

ENSNMLP00000021277

0.946

ENSNMLP00000044745

0.924

ENSNMLP00000009434

0.915

ENSNMLP00000020260

0.909

ENSNMLP00000000165

0.901

ENSNMLP00000016848

0.894

ENSNMLP00000013752

0.892

ENSNMLP00000018532

0.892

ENSNMLP00000018637

0.892

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000165	ENSNMLP00000009275	Small nuclear ribonucleoprotein D1 polypeptide.	RNA binding motif protein X-linked.	0.901
ENSNMLP00000000165	ENSNMLP00000009434	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein polypeptide G.	0.999
ENSNMLP00000000165	ENSNMLP00000013752	Small nuclear ribonucleoprotein D1 polypeptide.	RNA-binding region (RNP1, RRM) containing 3.	0.979
ENSNMLP00000000165	ENSNMLP00000017533	Small nuclear ribonucleoprotein D1 polypeptide.	Heterogeneous nuclear ribonucleoprotein K.	0.642
ENSNMLP00000000165	ENSNMLP00000018532	Small nuclear ribonucleoprotein D1 polypeptide.	Heterogeneous nuclear ribonucleoprotein A1a.	0.619
ENSNMLP00000000165	ENSNMLP00000018637	Small nuclear ribonucleoprotein D1 polypeptide.	Heterogeneous nuclear ribonucleoprotein A3.	0.619
ENSNMLP00000000165	ENSNMLP00000020260	Small nuclear ribonucleoprotein D1 polypeptide.	Splicing factor 3b, subunit 1.	0.993
ENSNMLP00000000165	ENSNMLP00000021277	Small nuclear ribonucleoprotein D1 polypeptide.	Heterogeneous nuclear ribonucleoprotein C.	0.808
ENSNMLP00000000165	ENSNMLP00000044745	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein D3 polypeptide, like.	0.999
ENSNMLP00000009275	ENSNMLP00000000165	RNA binding motif protein X-linked.	Small nuclear ribonucleoprotein D1 polypeptide.	0.901
ENSNMLP00000009275	ENSNMLP00000009434	RNA binding motif protein X-linked.	Small nuclear ribonucleoprotein polypeptide G.	0.915
ENSNMLP00000009275	ENSNMLP00000013752	RNA binding motif protein X-linked.	RNA-binding region (RNP1, RRM) containing 3.	0.892
ENSNMLP00000009275	ENSNMLP00000016848	RNA binding motif protein X-linked.	UPF1 RNA helicase and ATPase.	0.894
ENSNMLP00000009275	ENSNMLP00000017533	RNA binding motif protein X-linked.	Heterogeneous nuclear ribonucleoprotein K.	0.966
ENSNMLP00000009275	ENSNMLP00000018532	RNA binding motif protein X-linked.	Heterogeneous nuclear ribonucleoprotein A1a.	0.892
ENSNMLP00000009275	ENSNMLP00000018637	RNA binding motif protein X-linked.	Heterogeneous nuclear ribonucleoprotein A3.	0.892
ENSNMLP00000009275	ENSNMLP00000020260	RNA binding motif protein X-linked.	Splicing factor 3b, subunit 1.	0.909
ENSNMLP00000009275	ENSNMLP00000021277	RNA binding motif protein X-linked.	Heterogeneous nuclear ribonucleoprotein C.	0.946
ENSNMLP00000009275	ENSNMLP00000044745	RNA binding motif protein X-linked.	Small nuclear ribonucleoprotein D3 polypeptide, like.	0.924
ENSNMLP00000009434	ENSNMLP00000000165	Small nuclear ribonucleoprotein polypeptide G.	Small nuclear ribonucleoprotein D1 polypeptide.	0.999