ENSNMLP00000010496 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000010496

Neural proliferation, differentiation and control, 1a. (323 aa)

Predicted Functional Partners:

ENSNMLP00000010494

0.795

ENSNMLP00000016267

0.516

ENSNMLP00000007370

0.460

ENSNMLP00000020079

0.442

ENSNMLP00000041854

0.442

ENSNMLP00000001972

0.416

ENSNMLP00000003521

0.416

ENSNMLP00000006300

0.416

ENSNMLP00000009462

0.416

ENSNMLP00000014516

0.416

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001972	ENSNMLP00000010496	POU class 2 homeobox 3.	Neural proliferation, differentiation and control, 1a.	0.416
ENSNMLP00000003521	ENSNMLP00000010496	POU class 1 homeobox 1.	Neural proliferation, differentiation and control, 1a.	0.416
ENSNMLP00000006300	ENSNMLP00000010496	POU class 2 homeobox 2a.	Neural proliferation, differentiation and control, 1a.	0.416
ENSNMLP00000007370	ENSNMLP00000010496	Amyloid beta (A4) precursor-like protein 1.	Neural proliferation, differentiation and control, 1a.	0.460
ENSNMLP00000009462	ENSNMLP00000010496	POU class 3 homeobox 3b.	Neural proliferation, differentiation and control, 1a.	0.416
ENSNMLP00000010494	ENSNMLP00000010496	POU domain, class 5, transcription factor 3.	Neural proliferation, differentiation and control, 1a.	0.795
ENSNMLP00000010496	ENSNMLP00000001972	Neural proliferation, differentiation and control, 1a.	POU class 2 homeobox 3.	0.416
ENSNMLP00000010496	ENSNMLP00000003521	Neural proliferation, differentiation and control, 1a.	POU class 1 homeobox 1.	0.416
ENSNMLP00000010496	ENSNMLP00000006300	Neural proliferation, differentiation and control, 1a.	POU class 2 homeobox 2a.	0.416
ENSNMLP00000010496	ENSNMLP00000007370	Neural proliferation, differentiation and control, 1a.	Amyloid beta (A4) precursor-like protein 1.	0.460
ENSNMLP00000010496	ENSNMLP00000009462	Neural proliferation, differentiation and control, 1a.	POU class 3 homeobox 3b.	0.416
ENSNMLP00000010496	ENSNMLP00000010494	Neural proliferation, differentiation and control, 1a.	POU domain, class 5, transcription factor 3.	0.795
ENSNMLP00000010496	ENSNMLP00000014516	Neural proliferation, differentiation and control, 1a.	POU class 3 homeobox 2a.	0.416
ENSNMLP00000010496	ENSNMLP00000016267	Neural proliferation, differentiation and control, 1a.	annotation not available	0.516
ENSNMLP00000010496	ENSNMLP00000020079	Neural proliferation, differentiation and control, 1a.	POU class 6 homeobox 1.	0.442
ENSNMLP00000010496	ENSNMLP00000041854	Neural proliferation, differentiation and control, 1a.	POU class 6 homeobox 2.	0.442
ENSNMLP00000014516	ENSNMLP00000010496	POU class 3 homeobox 2a.	Neural proliferation, differentiation and control, 1a.	0.416
ENSNMLP00000016267	ENSNMLP00000010496	annotation not available	Neural proliferation, differentiation and control, 1a.	0.516
ENSNMLP00000020079	ENSNMLP00000010496	POU class 6 homeobox 1.	Neural proliferation, differentiation and control, 1a.	0.442
ENSNMLP00000041854	ENSNMLP00000010496	POU class 6 homeobox 2.	Neural proliferation, differentiation and control, 1a.	0.442