STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000012004Collagen, type IX, alpha 3. (334 aa)    
Predicted Functional Partners:
ENSNMLP00000005269
annotation not available
    
 0.859
ENSNMLP00000011647
Integrin, beta 1a.
    
 0.859
ENSNMLP00000031387
Integrin, beta 5.
    
 0.859
ENSNMLP00000009878
Integrin, beta 6.
    
 0.857
ENSNMLP00000005458
Integrin, beta 8.
    
 0.851
ENSNMLP00000013986
Integrin, alpha 3b.
    
 0.850
ENSNMLP00000031252
Integrin, alpha 6a.
    
 0.850
ENSNMLP00000011453
Integrin, alpha 8.
    
 0.849
ENSNMLP00000003236
Integrin, alpha 1.
    
 0.845
ENSNMLP00000004091
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.
    
 0.845
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.