ENSNMLP00000012593 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000012593

Cysteine and histidine-rich domain (CHORD) containing 1b. (331 aa)

Predicted Functional Partners:

ENSNMLP00000003766

0.973

ENSNMLP00000016936

0.962

ENSNMLP00000036038

0.961

ENSNMLP00000018892

0.904

ENSNMLP00000022075

0.904

ENSNMLP00000044395

0.904

ENSNMLP00000002523

0.897

ENSNMLP00000002636

0.678

ENSNMLP00000032605

0.617

ENSNMLP00000037756

0.603

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000002523	ENSNMLP00000002636	annotation not available	annotation not available	0.952
ENSNMLP00000002523	ENSNMLP00000003766	annotation not available	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.969
ENSNMLP00000002523	ENSNMLP00000012593	annotation not available	Cysteine and histidine-rich domain (CHORD) containing 1b.	0.897
ENSNMLP00000002523	ENSNMLP00000016936	annotation not available	Protein phosphatase 5, catalytic subunit.	0.985
ENSNMLP00000002523	ENSNMLP00000018892	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.787
ENSNMLP00000002523	ENSNMLP00000022075	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.787
ENSNMLP00000002523	ENSNMLP00000032605	annotation not available	Tetratricopeptide repeat domain 4.	0.839
ENSNMLP00000002523	ENSNMLP00000036038	annotation not available	Heat shock protein 90, beta (grp94), member 1.	0.809
ENSNMLP00000002523	ENSNMLP00000037756	annotation not available	annotation not available	0.537
ENSNMLP00000002523	ENSNMLP00000044395	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.787
ENSNMLP00000002636	ENSNMLP00000002523	annotation not available	annotation not available	0.952
ENSNMLP00000002636	ENSNMLP00000003766	annotation not available	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.618
ENSNMLP00000002636	ENSNMLP00000012593	annotation not available	Cysteine and histidine-rich domain (CHORD) containing 1b.	0.678
ENSNMLP00000002636	ENSNMLP00000016936	annotation not available	Protein phosphatase 5, catalytic subunit.	0.660
ENSNMLP00000002636	ENSNMLP00000018892	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.954
ENSNMLP00000002636	ENSNMLP00000022075	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.954
ENSNMLP00000002636	ENSNMLP00000032605	annotation not available	Tetratricopeptide repeat domain 4.	0.555
ENSNMLP00000002636	ENSNMLP00000036038	annotation not available	Heat shock protein 90, beta (grp94), member 1.	0.952
ENSNMLP00000002636	ENSNMLP00000044395	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.954
ENSNMLP00000003766	ENSNMLP00000002523	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	annotation not available	0.969