STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000013393alkB homolog 1, histone H2A dioxygenase. (350 aa)    
Predicted Functional Partners:
ENSNMLP00000013949
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.824
ENSNMLP00000016748
O-6-methylguanine-DNA methyltransferase.
  
  
 0.582
ENSNMLP00000027533
Methyltransferase like 4.
   
  
 0.579
ENSNMLP00000042275
alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.573
ENSNMLP00000019894
alkB homolog 5, RNA demethylase.
      
 0.572
ENSNMLP00000025877
tRNA methyltransferase 6.
   
  
 0.572
ENSNMLP00000018329
alkB homolog 6.
   
  
 0.569
ENSNMLP00000002556
alkB homolog 4, lysine demthylase.
   
  
 0.568
ENSNMLP00000030629
Jumonji domain containing 4.
   
  
 0.563
ENSNMLP00000039793
N-6 adenine-specific DNA methyltransferase 1.
      
 0.556
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.