ENSNMLP00000013640 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000013640

Major facilitator superfamily domain containing 12a. (495 aa)

Predicted Functional Partners:

ENSNMLP00000036331

0.736

ENSNMLP00000004131

0.723

ENSNMLP00000017312

0.722

ENSNMLP00000006849

0.718

ENSNMLP00000024058

0.704

ENSNMLP00000004528

0.636

ENSNMLP00000026603

0.636

ENSNMLP00000037118

0.636

ENSNMLP00000022450

0.612

ENSNMLP00000037392

0.572

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000004131	ENSNMLP00000013640	annotation not available	Major facilitator superfamily domain containing 12a.	0.723
ENSNMLP00000004131	ENSNMLP00000017312	annotation not available	Thymidine kinase 1, soluble.	0.762
ENSNMLP00000004131	ENSNMLP00000022450	annotation not available	Deoxythymidylate kinase (thymidylate kinase).	0.951
ENSNMLP00000004131	ENSNMLP00000036331	annotation not available	Thymidylate synthetase.	0.980
ENSNMLP00000004528	ENSNMLP00000006849	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.820
ENSNMLP00000004528	ENSNMLP00000013640	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	Major facilitator superfamily domain containing 12a.	0.636
ENSNMLP00000004528	ENSNMLP00000026603	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	annotation not available	0.821
ENSNMLP00000004528	ENSNMLP00000037118	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	Glyceraldehyde-3-phosphate dehydrogenase.	0.822
ENSNMLP00000006849	ENSNMLP00000004528	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	0.820
ENSNMLP00000006849	ENSNMLP00000013640	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	Major facilitator superfamily domain containing 12a.	0.718
ENSNMLP00000006849	ENSNMLP00000017312	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	Thymidine kinase 1, soluble.	0.646
ENSNMLP00000006849	ENSNMLP00000026603	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	annotation not available	0.820
ENSNMLP00000006849	ENSNMLP00000036331	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	Thymidylate synthetase.	0.574
ENSNMLP00000006849	ENSNMLP00000037118	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	Glyceraldehyde-3-phosphate dehydrogenase.	0.820
ENSNMLP00000013640	ENSNMLP00000004131	Major facilitator superfamily domain containing 12a.	annotation not available	0.723
ENSNMLP00000013640	ENSNMLP00000004528	Major facilitator superfamily domain containing 12a.	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	0.636
ENSNMLP00000013640	ENSNMLP00000006849	Major facilitator superfamily domain containing 12a.	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.718
ENSNMLP00000013640	ENSNMLP00000017312	Major facilitator superfamily domain containing 12a.	Thymidine kinase 1, soluble.	0.722
ENSNMLP00000013640	ENSNMLP00000022450	Major facilitator superfamily domain containing 12a.	Deoxythymidylate kinase (thymidylate kinase).	0.612
ENSNMLP00000013640	ENSNMLP00000024058	Major facilitator superfamily domain containing 12a.	5'-nucleotidase, ecto (CD73).	0.704