ENSNMLP00000018434 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000018434

3-hydroxyisobutyryl-CoA hydrolase. (380 aa)

Predicted Functional Partners:

ENSNMLP00000034721

0.995

ENSNMLP00000001294

0.991

ENSNMLP00000009457

0.991

ENSNMLP00000023605

0.991

ENSNMLP00000025384

0.991

ENSNMLP00000040198

0.991

ENSNMLP00000021455

0.990

ENSNMLP00000027953

0.990

ENSNMLP00000034101

0.990

ENSNMLP00000035587

0.990

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001294	ENSNMLP00000009457	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S9.	0.999
ENSNMLP00000001294	ENSNMLP00000018434	Mitochondrial ribosomal protein S35.	3-hydroxyisobutyryl-CoA hydrolase.	0.991
ENSNMLP00000001294	ENSNMLP00000021455	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S11.	0.999
ENSNMLP00000001294	ENSNMLP00000023605	Mitochondrial ribosomal protein S35.	Death associated protein 3.	0.999
ENSNMLP00000001294	ENSNMLP00000025384	Mitochondrial ribosomal protein S35.	Superoxide dismutase 2, mitochondrial.	0.991
ENSNMLP00000001294	ENSNMLP00000027953	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S7.	0.996
ENSNMLP00000001294	ENSNMLP00000034101	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S16.	0.999
ENSNMLP00000001294	ENSNMLP00000034721	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S5.	0.999
ENSNMLP00000001294	ENSNMLP00000035587	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S10.	0.999
ENSNMLP00000001294	ENSNMLP00000040198	Mitochondrial ribosomal protein S35.	Mitochondrial ribosomal protein S15.	0.999
ENSNMLP00000009457	ENSNMLP00000001294	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S35.	0.999
ENSNMLP00000009457	ENSNMLP00000018434	Mitochondrial ribosomal protein S9.	3-hydroxyisobutyryl-CoA hydrolase.	0.991
ENSNMLP00000009457	ENSNMLP00000021455	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S11.	0.999
ENSNMLP00000009457	ENSNMLP00000023605	Mitochondrial ribosomal protein S9.	Death associated protein 3.	0.999
ENSNMLP00000009457	ENSNMLP00000025384	Mitochondrial ribosomal protein S9.	Superoxide dismutase 2, mitochondrial.	0.994
ENSNMLP00000009457	ENSNMLP00000027953	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S7.	0.999
ENSNMLP00000009457	ENSNMLP00000034101	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S16.	0.999
ENSNMLP00000009457	ENSNMLP00000034721	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S5.	0.999
ENSNMLP00000009457	ENSNMLP00000035587	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S10.	0.999
ENSNMLP00000009457	ENSNMLP00000040198	Mitochondrial ribosomal protein S9.	Mitochondrial ribosomal protein S15.	0.999