ENSNMLP00000018481 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000018481

Nidogen 1a. (1136 aa)

Predicted Functional Partners:

ENSNMLP00000013590

0.850

ENSNMLP00000007714

0.818

ENSNMLP00000003663

0.812

ENSNMLP00000001642

0.770

ENSNMLP00000006313

0.770

ENSNMLP00000042647

0.770

LAMA2

0.686

ENSNMLP00000041567

0.686

ENSNMLP00000000580

0.679

ENSNMLP00000008119

0.679

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000000580	ENSNMLP00000001642	ENSNMLP00000000580	ENSNMLP00000001642	annotation not available	Laminin, gamma 1.	0.934
ENSNMLP00000000580	ENSNMLP00000006313	ENSNMLP00000000580	ENSNMLP00000006313	annotation not available	Laminin, gamma 3.	0.934
ENSNMLP00000000580	ENSNMLP00000007714	ENSNMLP00000000580	ENSNMLP00000007714	annotation not available	Malate synthase-like.	0.894
ENSNMLP00000000580	ENSNMLP00000013590	ENSNMLP00000000580	ENSNMLP00000013590	annotation not available	Agrin.	0.414
ENSNMLP00000000580	ENSNMLP00000018481	ENSNMLP00000000580	ENSNMLP00000018481	annotation not available	Nidogen 1a.	0.679
ENSNMLP00000000580	ENSNMLP00000041567	ENSNMLP00000000580	ENSNMLP00000041567	annotation not available	annotation not available	0.959
ENSNMLP00000000580	ENSNMLP00000042647	ENSNMLP00000000580	ENSNMLP00000042647	annotation not available	Laminin, gamma 2.	0.934
ENSNMLP00000000580	LAMA2	ENSNMLP00000000580	ENSNMLP00000034412	annotation not available	Laminin subunit alpha 2.	0.611
ENSNMLP00000001642	ENSNMLP00000000580	ENSNMLP00000001642	ENSNMLP00000000580	Laminin, gamma 1.	annotation not available	0.934
ENSNMLP00000001642	ENSNMLP00000007714	ENSNMLP00000001642	ENSNMLP00000007714	Laminin, gamma 1.	Malate synthase-like.	0.894
ENSNMLP00000001642	ENSNMLP00000008119	ENSNMLP00000001642	ENSNMLP00000008119	Laminin, gamma 1.	annotation not available	0.934
ENSNMLP00000001642	ENSNMLP00000018481	ENSNMLP00000001642	ENSNMLP00000018481	Laminin, gamma 1.	Nidogen 1a.	0.770
ENSNMLP00000001642	ENSNMLP00000041567	ENSNMLP00000001642	ENSNMLP00000041567	Laminin, gamma 1.	annotation not available	0.969
ENSNMLP00000001642	LAMA2	ENSNMLP00000001642	ENSNMLP00000034412	Laminin, gamma 1.	Laminin subunit alpha 2.	0.922
ENSNMLP00000003663	ENSNMLP00000007714	ENSNMLP00000003663	ENSNMLP00000007714	Cytochrome b5 reductase 4.	Malate synthase-like.	0.746
ENSNMLP00000003663	ENSNMLP00000018481	ENSNMLP00000003663	ENSNMLP00000018481	Cytochrome b5 reductase 4.	Nidogen 1a.	0.812
ENSNMLP00000006313	ENSNMLP00000000580	ENSNMLP00000006313	ENSNMLP00000000580	Laminin, gamma 3.	annotation not available	0.934
ENSNMLP00000006313	ENSNMLP00000007714	ENSNMLP00000006313	ENSNMLP00000007714	Laminin, gamma 3.	Malate synthase-like.	0.894
ENSNMLP00000006313	ENSNMLP00000008119	ENSNMLP00000006313	ENSNMLP00000008119	Laminin, gamma 3.	annotation not available	0.934
ENSNMLP00000006313	ENSNMLP00000018481	ENSNMLP00000006313	ENSNMLP00000018481	Laminin, gamma 3.	Nidogen 1a.	0.770