STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000019185OTU deubiquitinase 5a. (468 aa)    
Predicted Functional Partners:
ENSNMLP00000001079
Ribosomal protein S27a.
    
 0.967
ENSNMLP00000010067
annotation not available
    
 0.930
ENSNMLP00000001704
Ubiquitin B.
    
 0.927
ENSNMLP00000007557
annotation not available
    
  0.857
ENSNMLP00000016684
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.857
ENSNMLP00000008250
Tnf receptor-associated factor 2a.
    
 0.828
ENSNMLP00000008533
Tnf receptor-associated factor 2b.
    
 0.828
ENSNMLP00000043347
Un-named sa808.
    
 0.828
ENSNMLP00000001681
annotation not available
    
  0.798
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
    0.789
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.