ENSNMLP00000019452 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000019452

annotation not available (210 aa)

Predicted Functional Partners:

ENSNMLP00000012542

0.996

ENSNMLP00000013424

0.996

ENSNMLP00000025523

0.995

ENSNMLP00000042493

0.982

ENSNMLP00000012895

0.966

ENSNMLP00000025332

0.965

ENSNMLP00000021576

0.959

ENSNMLP00000013607

0.958

ENSNMLP00000022127

0.937

ENSNMLP00000044318

0.926

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000012542	ENSNMLP00000012895	NDC80 kinetochore complex component.	annotation not available	0.595
ENSNMLP00000012542	ENSNMLP00000013424	NDC80 kinetochore complex component.	SPC25 component of NDC80 kinetochore complex.	0.999
ENSNMLP00000012542	ENSNMLP00000013607	NDC80 kinetochore complex component.	annotation not available	0.927
ENSNMLP00000012542	ENSNMLP00000019452	NDC80 kinetochore complex component.	annotation not available	0.996
ENSNMLP00000012542	ENSNMLP00000021576	NDC80 kinetochore complex component.	Si:dkey-6i22.5.	0.844
ENSNMLP00000012542	ENSNMLP00000022127	NDC80 kinetochore complex component.	Baculoviral IAP repeat containing 5a.	0.926
ENSNMLP00000012542	ENSNMLP00000025332	NDC80 kinetochore complex component.	NSL1 component of MIS12 kinetochore complex.	0.958
ENSNMLP00000012542	ENSNMLP00000025523	NDC80 kinetochore complex component.	UF2 component of NDC80 kinetochore complex.	0.999
ENSNMLP00000012542	ENSNMLP00000042493	NDC80 kinetochore complex component.	MIS12 kinetochore complex component.	0.978
ENSNMLP00000012542	ENSNMLP00000044318	NDC80 kinetochore complex component.	BUB1 mitotic checkpoint serine/threonine kinase.	0.999
ENSNMLP00000012895	ENSNMLP00000012542	annotation not available	NDC80 kinetochore complex component.	0.595
ENSNMLP00000012895	ENSNMLP00000013424	annotation not available	SPC25 component of NDC80 kinetochore complex.	0.955
ENSNMLP00000012895	ENSNMLP00000013607	annotation not available	annotation not available	0.684
ENSNMLP00000012895	ENSNMLP00000019452	annotation not available	annotation not available	0.966
ENSNMLP00000012895	ENSNMLP00000021576	annotation not available	Si:dkey-6i22.5.	0.532
ENSNMLP00000012895	ENSNMLP00000022127	annotation not available	Baculoviral IAP repeat containing 5a.	0.469
ENSNMLP00000012895	ENSNMLP00000025523	annotation not available	UF2 component of NDC80 kinetochore complex.	0.701
ENSNMLP00000012895	ENSNMLP00000044318	annotation not available	BUB1 mitotic checkpoint serine/threonine kinase.	0.796
ENSNMLP00000013424	ENSNMLP00000012542	SPC25 component of NDC80 kinetochore complex.	NDC80 kinetochore complex component.	0.999
ENSNMLP00000013424	ENSNMLP00000012895	SPC25 component of NDC80 kinetochore complex.	annotation not available	0.955