ENSNMLP00000022911 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000022911

annotation not available (198 aa)

Predicted Functional Partners:

ENSNMLP00000031387

0.865

ENSNMLP00000005269

0.862

ENSNMLP00000009878

0.862

ENSNMLP00000011647

0.862

ENSNMLP00000005458

0.861

ENSNMLP00000031252

0.859

ENSNMLP00000018206

0.857

ENSNMLP00000003236

0.852

ENSNMLP00000004091

0.852

ENSNMLP00000013986

0.852

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003236	ENSNMLP00000004091	Integrin, alpha 1.	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	0.860
ENSNMLP00000003236	ENSNMLP00000005269	Integrin, alpha 1.	annotation not available	0.903
ENSNMLP00000003236	ENSNMLP00000005458	Integrin, alpha 1.	Integrin, beta 8.	0.903
ENSNMLP00000003236	ENSNMLP00000009878	Integrin, alpha 1.	Integrin, beta 6.	0.911
ENSNMLP00000003236	ENSNMLP00000011647	Integrin, alpha 1.	Integrin, beta 1a.	0.903
ENSNMLP00000003236	ENSNMLP00000013986	Integrin, alpha 1.	Integrin, alpha 3b.	0.856
ENSNMLP00000003236	ENSNMLP00000022911	Integrin, alpha 1.	annotation not available	0.852
ENSNMLP00000003236	ENSNMLP00000031252	Integrin, alpha 1.	Integrin, alpha 6a.	0.856
ENSNMLP00000003236	ENSNMLP00000031387	Integrin, alpha 1.	Integrin, beta 5.	0.909
ENSNMLP00000004091	ENSNMLP00000003236	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, alpha 1.	0.860
ENSNMLP00000004091	ENSNMLP00000005269	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	annotation not available	0.903
ENSNMLP00000004091	ENSNMLP00000005458	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, beta 8.	0.903
ENSNMLP00000004091	ENSNMLP00000009878	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, beta 6.	0.906
ENSNMLP00000004091	ENSNMLP00000011647	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, beta 1a.	0.903
ENSNMLP00000004091	ENSNMLP00000013986	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, alpha 3b.	0.856
ENSNMLP00000004091	ENSNMLP00000022911	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	annotation not available	0.852
ENSNMLP00000004091	ENSNMLP00000031252	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, alpha 6a.	0.856
ENSNMLP00000004091	ENSNMLP00000031387	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	Integrin, beta 5.	0.908
ENSNMLP00000005269	ENSNMLP00000003236	annotation not available	Integrin, alpha 1.	0.903
ENSNMLP00000005269	ENSNMLP00000004091	annotation not available	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.	0.903