ENSNMLP00000022995 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000022995

Small nuclear RNA activating complex, polypeptide 3. (378 aa)

Predicted Functional Partners:

ENSNMLP00000029551

0.997

ENSNMLP00000006186

0.990

ENSNMLP00000023790

0.990

ENSNMLP00000017292

0.976

ENSNMLP00000013365

0.969

ENSNMLP00000027278

0.962

ENSNMLP00000031135

0.945

ENSNMLP00000011580

0.916

ENSNMLP00000042510

0.916

ENSNMLP00000016276

0.909

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000006186	ENSNMLP00000011580	annotation not available	TATA box binding protein like 2.	0.904
ENSNMLP00000006186	ENSNMLP00000013365	annotation not available	Small nuclear RNA activating complex, polypeptide 5.	0.980
ENSNMLP00000006186	ENSNMLP00000017292	annotation not available	General transcription factor IIA, 2.	0.886
ENSNMLP00000006186	ENSNMLP00000022995	annotation not available	Small nuclear RNA activating complex, polypeptide 3.	0.990
ENSNMLP00000006186	ENSNMLP00000027278	annotation not available	General transcription factor IIB.	0.934
ENSNMLP00000006186	ENSNMLP00000029551	annotation not available	annotation not available	0.990
ENSNMLP00000006186	ENSNMLP00000031135	annotation not available	General transcription factor IIA, 1.	0.881
ENSNMLP00000006186	ENSNMLP00000042510	annotation not available	TATA box binding protein.	0.901
ENSNMLP00000011580	ENSNMLP00000006186	TATA box binding protein like 2.	annotation not available	0.904
ENSNMLP00000011580	ENSNMLP00000013365	TATA box binding protein like 2.	Small nuclear RNA activating complex, polypeptide 5.	0.876
ENSNMLP00000011580	ENSNMLP00000016276	TATA box binding protein like 2.	General transcription factor IIF, polypeptide 1.	0.983
ENSNMLP00000011580	ENSNMLP00000017292	TATA box binding protein like 2.	General transcription factor IIA, 2.	0.990
ENSNMLP00000011580	ENSNMLP00000022995	TATA box binding protein like 2.	Small nuclear RNA activating complex, polypeptide 3.	0.916
ENSNMLP00000011580	ENSNMLP00000023790	TATA box binding protein like 2.	annotation not available	0.901
ENSNMLP00000011580	ENSNMLP00000027278	TATA box binding protein like 2.	General transcription factor IIB.	0.992
ENSNMLP00000011580	ENSNMLP00000029551	TATA box binding protein like 2.	annotation not available	0.913
ENSNMLP00000011580	ENSNMLP00000031135	TATA box binding protein like 2.	General transcription factor IIA, 1.	0.984
ENSNMLP00000011580	ENSNMLP00000042510	TATA box binding protein like 2.	TATA box binding protein.	0.839
ENSNMLP00000013365	ENSNMLP00000006186	Small nuclear RNA activating complex, polypeptide 5.	annotation not available	0.980
ENSNMLP00000013365	ENSNMLP00000011580	Small nuclear RNA activating complex, polypeptide 5.	TATA box binding protein like 2.	0.876