ENSNMLP00000023048 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000023048

annotation not available (270 aa)

Predicted Functional Partners:

ENSNMLP00000024191

0.520

ENSNMLP00000019030

0.515

ENSNMLP00000020298

0.515

ENSNMLP00000017078

0.509

ENSNMLP00000030963

0.495

ENSNMLP00000009064

0.469

ENSNMLP00000016859

0.467

ENSNMLP00000009657

0.463

ENSNMLP00000044573

0.453

ENSNMLP00000029593

0.452

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000009064	ENSNMLP00000017078	Crystallin, beta A1b.	annotation not available	0.400
ENSNMLP00000009064	ENSNMLP00000019030	Crystallin, beta A1b.	annotation not available	0.411
ENSNMLP00000009064	ENSNMLP00000020298	Crystallin, beta A1b.	annotation not available	0.415
ENSNMLP00000009064	ENSNMLP00000023048	Crystallin, beta A1b.	annotation not available	0.469
ENSNMLP00000009064	ENSNMLP00000024191	Crystallin, beta A1b.	annotation not available	0.400
ENSNMLP00000009657	ENSNMLP00000017078	Melanocortin 4 receptor.	annotation not available	0.508
ENSNMLP00000009657	ENSNMLP00000019030	Melanocortin 4 receptor.	annotation not available	0.529
ENSNMLP00000009657	ENSNMLP00000020298	Melanocortin 4 receptor.	annotation not available	0.500
ENSNMLP00000009657	ENSNMLP00000023048	Melanocortin 4 receptor.	annotation not available	0.463
ENSNMLP00000009657	ENSNMLP00000024191	Melanocortin 4 receptor.	annotation not available	0.504
ENSNMLP00000009657	ENSNMLP00000044573	Melanocortin 4 receptor.	Zgc:153675.	0.419
ENSNMLP00000016859	ENSNMLP00000017078	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	annotation not available	0.444
ENSNMLP00000016859	ENSNMLP00000019030	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	annotation not available	0.464
ENSNMLP00000016859	ENSNMLP00000020298	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	annotation not available	0.465
ENSNMLP00000016859	ENSNMLP00000023048	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	annotation not available	0.467
ENSNMLP00000016859	ENSNMLP00000024191	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	annotation not available	0.484
ENSNMLP00000017078	ENSNMLP00000009064	annotation not available	Crystallin, beta A1b.	0.400
ENSNMLP00000017078	ENSNMLP00000009657	annotation not available	Melanocortin 4 receptor.	0.508
ENSNMLP00000017078	ENSNMLP00000016859	annotation not available	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	0.444
ENSNMLP00000017078	ENSNMLP00000023048	annotation not available	annotation not available	0.509