STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000023525Cullin 4A. (737 aa)    
Predicted Functional Partners:
ENSNMLP00000013790
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.994
ENSNMLP00000022528
Damage-specific DNA binding protein 1.
   
 0.994
ENSNMLP00000010334
Damage-specific DNA binding protein 2.
    
 0.991
ENSNMLP00000036844
Cereblon.
    
 0.990
ENSNMLP00000043117
Excision repair cross-complementation group 8.
    
 0.988
ENSNMLP00000026333
Denticleless E3 ubiquitin protein ligase homolog (Drosophila).
    
 0.987
ENSNMLP00000005952
DET1 partner of COP1 E3 ubiquitin ligase.
    
 0.979
ENSNMLP00000019328
Ddb1 and cul4 associated factor 11.
    
 0.979
ENSNMLP00000029721
Ring finger protein 7.
    
 0.974
ENSNMLP00000022138
COP9 signalosome subunit 5.
    
 0.973
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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