ENSNMLP00000025034 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000025034

Pyridoxamine 5'-phosphate oxidase. (282 aa)

Predicted Functional Partners:

ENSNMLP00000040081

0.980

ENSNMLP00000009298

0.936

ENSNMLP00000026363

0.928

ENSNMLP00000039541

0.928

ENSNMLP00000038805

0.892

ENSNMLP00000028905

0.881

ENSNMLP00000014024

0.856

ENSNMLP00000000984

0.852

ENSNMLP00000020783

0.850

ENSNMLP00000002265

0.845

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000984	ENSNMLP00000009298	Phosphatase, orphan 2.	Isoamyl acetate hydrolyzing esterase 1 (putative).	0.860
ENSNMLP00000000984	ENSNMLP00000025034	Phosphatase, orphan 2.	Pyridoxamine 5'-phosphate oxidase.	0.852
ENSNMLP00000000984	ENSNMLP00000026363	Phosphatase, orphan 2.	Pyridoxal (pyridoxine, vitamin B6) kinase a.	0.837
ENSNMLP00000000984	ENSNMLP00000039541	Phosphatase, orphan 2.	Pyridoxal (pyridoxine, vitamin B6) kinase b.	0.837
ENSNMLP00000002265	ENSNMLP00000014024	annotation not available	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	0.579
ENSNMLP00000002265	ENSNMLP00000025034	annotation not available	Pyridoxamine 5'-phosphate oxidase.	0.845
ENSNMLP00000009298	ENSNMLP00000000984	Isoamyl acetate hydrolyzing esterase 1 (putative).	Phosphatase, orphan 2.	0.860
ENSNMLP00000009298	ENSNMLP00000025034	Isoamyl acetate hydrolyzing esterase 1 (putative).	Pyridoxamine 5'-phosphate oxidase.	0.936
ENSNMLP00000009298	ENSNMLP00000026363	Isoamyl acetate hydrolyzing esterase 1 (putative).	Pyridoxal (pyridoxine, vitamin B6) kinase a.	0.885
ENSNMLP00000009298	ENSNMLP00000039541	Isoamyl acetate hydrolyzing esterase 1 (putative).	Pyridoxal (pyridoxine, vitamin B6) kinase b.	0.885
ENSNMLP00000009298	ENSNMLP00000040081	Isoamyl acetate hydrolyzing esterase 1 (putative).	NAD(P)HX epimerase.	0.834
ENSNMLP00000014024	ENSNMLP00000002265	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	annotation not available	0.579
ENSNMLP00000014024	ENSNMLP00000020783	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	Choline dehydrogenase.	0.579
ENSNMLP00000014024	ENSNMLP00000025034	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	Pyridoxamine 5'-phosphate oxidase.	0.856
ENSNMLP00000014024	ENSNMLP00000028905	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	Phosphoglycolate phosphatase.	0.511
ENSNMLP00000014024	ENSNMLP00000038805	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	Pyridoxal (pyridoxine, vitamin B6) phosphatase.	0.511
ENSNMLP00000020783	ENSNMLP00000014024	Choline dehydrogenase.	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	0.579
ENSNMLP00000020783	ENSNMLP00000025034	Choline dehydrogenase.	Pyridoxamine 5'-phosphate oxidase.	0.850
ENSNMLP00000025034	ENSNMLP00000000984	Pyridoxamine 5'-phosphate oxidase.	Phosphatase, orphan 2.	0.852
ENSNMLP00000025034	ENSNMLP00000002265	Pyridoxamine 5'-phosphate oxidase.	annotation not available	0.845