ENSNMLP00000025263 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000025263

annotation not available (405 aa)

Predicted Functional Partners:

ENSNMLP00000001079

0.471

ENSNMLP00000025791

0.471

ENSNMLP00000001704

0.466

ENSNMLP00000024480

0.466

ENSNMLP00000003766

0.463

ENSNMLP00000027329

0.456

ENSNMLP00000015923

0.451

ENSNMLP00000014741

0.450

ENSNMLP00000021063

0.442

ENSNMLP00000037216

0.440

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001079	ENSNMLP00000001704	Ribosomal protein S27a.	Ubiquitin B.	0.997
ENSNMLP00000001079	ENSNMLP00000014741	Ribosomal protein S27a.	annotation not available	0.929
ENSNMLP00000001079	ENSNMLP00000015923	Ribosomal protein S27a.	Regulatory factor X-associated ankyrin-containing protein.	0.414
ENSNMLP00000001079	ENSNMLP00000021063	Ribosomal protein S27a.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.697
ENSNMLP00000001079	ENSNMLP00000024480	Ribosomal protein S27a.	Receptor-interacting serine-threonine kinase 4.	0.859
ENSNMLP00000001079	ENSNMLP00000025263	Ribosomal protein S27a.	annotation not available	0.471
ENSNMLP00000001704	ENSNMLP00000001079	Ubiquitin B.	Ribosomal protein S27a.	0.997
ENSNMLP00000001704	ENSNMLP00000014741	Ubiquitin B.	annotation not available	0.837
ENSNMLP00000001704	ENSNMLP00000015923	Ubiquitin B.	Regulatory factor X-associated ankyrin-containing protein.	0.414
ENSNMLP00000001704	ENSNMLP00000021063	Ubiquitin B.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.690
ENSNMLP00000001704	ENSNMLP00000024480	Ubiquitin B.	Receptor-interacting serine-threonine kinase 4.	0.810
ENSNMLP00000001704	ENSNMLP00000025263	Ubiquitin B.	annotation not available	0.466
ENSNMLP00000003766	ENSNMLP00000025263	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	annotation not available	0.463
ENSNMLP00000014741	ENSNMLP00000001079	annotation not available	Ribosomal protein S27a.	0.929
ENSNMLP00000014741	ENSNMLP00000001704	annotation not available	Ubiquitin B.	0.837
ENSNMLP00000014741	ENSNMLP00000021063	annotation not available	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.850
ENSNMLP00000014741	ENSNMLP00000024480	annotation not available	Receptor-interacting serine-threonine kinase 4.	0.436
ENSNMLP00000014741	ENSNMLP00000025263	annotation not available	annotation not available	0.450
ENSNMLP00000015923	ENSNMLP00000001079	Regulatory factor X-associated ankyrin-containing protein.	Ribosomal protein S27a.	0.414
ENSNMLP00000015923	ENSNMLP00000001704	Regulatory factor X-associated ankyrin-containing protein.	Ubiquitin B.	0.414