STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000025756PRP39 pre-mRNA processing factor 39 homolog (yeast). (763 aa)    
Predicted Functional Partners:
ENSNMLP00000020260
Splicing factor 3b, subunit 1.
   
 0.986
ENSNMLP00000011192
Small nuclear ribonucleoprotein polypeptide C.
   
 0.985
ENSNMLP00000010703
Small nuclear ribonucleoprotein polypeptide A.
    
 0.984
ENSNMLP00000037698
Nuclear cap binding protein subunit 2.
    
 0.977
ENSNMLP00000016507
tRNA selenocysteine 1 associated protein 1a.
   
 0.972
ENSNMLP00000044460
tRNA selenocysteine 1 associated protein 1b.
   
 0.972
ENSNMLP00000000165
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.970
ENSNMLP00000035266
annotation not available
   
 0.967
ENSNMLP00000000406
RNA binding motif protein 25a.
   
 0.960
ENSNMLP00000015287
annotation not available
   
 0.960
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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