RS1 protein (Neogobius melanostomus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RS1

Retinoschisin 1. (216 aa)

Predicted Functional Partners:

ENSNMLP00000043653

0.822

ENSNMLP00000033327

0.817

ENSNMLP00000021363

0.787

ENSNMLP00000024560

0.776

ENSNMLP00000016187

0.754

ENSNMLP00000002269

0.742

ENSNMLP00000003765

0.727

ENSNMLP00000036166

0.727

ENSNMLP00000030894

0.711

ENSNMLP00000014326

0.699

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000002269	ENSNMLP00000014326	ENSNMLP00000002269	ENSNMLP00000014326	Gametogenetin binding protein 2.	Peroxisomal biogenesis factor 10.	0.688
ENSNMLP00000002269	ENSNMLP00000030894	ENSNMLP00000002269	ENSNMLP00000030894	Gametogenetin binding protein 2.	Peroxisomal biogenesis factor 12.	0.680
ENSNMLP00000002269	RS1	ENSNMLP00000002269	ENSNMLP00000027650	Gametogenetin binding protein 2.	Retinoschisin 1.	0.742
ENSNMLP00000003765	ENSNMLP00000036166	ENSNMLP00000003765	ENSNMLP00000036166	Si:ch211-254p10.2.	Solute carrier family 40 member 1.	0.840
ENSNMLP00000003765	RS1	ENSNMLP00000003765	ENSNMLP00000027650	Si:ch211-254p10.2.	Retinoschisin 1.	0.727
ENSNMLP00000014326	ENSNMLP00000002269	ENSNMLP00000014326	ENSNMLP00000002269	Peroxisomal biogenesis factor 10.	Gametogenetin binding protein 2.	0.688
ENSNMLP00000014326	ENSNMLP00000030894	ENSNMLP00000014326	ENSNMLP00000030894	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 12.	0.998
ENSNMLP00000014326	RS1	ENSNMLP00000014326	ENSNMLP00000027650	Peroxisomal biogenesis factor 10.	Retinoschisin 1.	0.699
ENSNMLP00000016187	ENSNMLP00000033327	ENSNMLP00000016187	ENSNMLP00000033327	Cytochrome c-1.	Ferrochelatase.	0.502
ENSNMLP00000016187	RS1	ENSNMLP00000016187	ENSNMLP00000027650	Cytochrome c-1.	Retinoschisin 1.	0.754
ENSNMLP00000021363	ENSNMLP00000033327	ENSNMLP00000021363	ENSNMLP00000033327	Frataxin.	Ferrochelatase.	0.976
ENSNMLP00000021363	RS1	ENSNMLP00000021363	ENSNMLP00000027650	Frataxin.	Retinoschisin 1.	0.787
ENSNMLP00000024560	RS1	ENSNMLP00000024560	ENSNMLP00000027650	Protein S.	Retinoschisin 1.	0.776
ENSNMLP00000030894	ENSNMLP00000002269	ENSNMLP00000030894	ENSNMLP00000002269	Peroxisomal biogenesis factor 12.	Gametogenetin binding protein 2.	0.680
ENSNMLP00000030894	ENSNMLP00000014326	ENSNMLP00000030894	ENSNMLP00000014326	Peroxisomal biogenesis factor 12.	Peroxisomal biogenesis factor 10.	0.998
ENSNMLP00000030894	RS1	ENSNMLP00000030894	ENSNMLP00000027650	Peroxisomal biogenesis factor 12.	Retinoschisin 1.	0.711
ENSNMLP00000033327	ENSNMLP00000016187	ENSNMLP00000033327	ENSNMLP00000016187	Ferrochelatase.	Cytochrome c-1.	0.502
ENSNMLP00000033327	ENSNMLP00000021363	ENSNMLP00000033327	ENSNMLP00000021363	Ferrochelatase.	Frataxin.	0.976
ENSNMLP00000033327	RS1	ENSNMLP00000033327	ENSNMLP00000027650	Ferrochelatase.	Retinoschisin 1.	0.817
ENSNMLP00000036166	ENSNMLP00000003765	ENSNMLP00000036166	ENSNMLP00000003765	Solute carrier family 40 member 1.	Si:ch211-254p10.2.	0.840