ENSNMLP00000028028 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000028028

Adenosylhomocysteinase-like 1. (553 aa)

Predicted Functional Partners:

ENSNMLP00000004134

0.888

ENSNMLP00000020910

0.882

ENSNMLP00000039735

0.882

ENSNMLP00000017811

0.863

ENSNMLP00000041952

0.853

ENSNMLP00000027957

0.850

ENSNMLP00000039853

0.830

SDS

0.828

ENSNMLP00000006114

0.823

ENSNMLP00000034713

0.823

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000004134	ENSNMLP00000006114	ENSNMLP00000004134	ENSNMLP00000006114	Cystathionase (cystathionine gamma-lyase), like.	Kynurenine aminotransferase 3.	0.919
ENSNMLP00000004134	ENSNMLP00000017811	ENSNMLP00000004134	ENSNMLP00000017811	Cystathionase (cystathionine gamma-lyase), like.	Adenosylhomocysteinase.	0.931
ENSNMLP00000004134	ENSNMLP00000020910	ENSNMLP00000004134	ENSNMLP00000020910	Cystathionase (cystathionine gamma-lyase), like.	annotation not available	0.995
ENSNMLP00000004134	ENSNMLP00000027957	ENSNMLP00000004134	ENSNMLP00000027957	Cystathionase (cystathionine gamma-lyase), like.	Zgc:172121.	0.963
ENSNMLP00000004134	ENSNMLP00000028028	ENSNMLP00000004134	ENSNMLP00000028028	Cystathionase (cystathionine gamma-lyase), like.	Adenosylhomocysteinase-like 1.	0.888
ENSNMLP00000004134	ENSNMLP00000034713	ENSNMLP00000004134	ENSNMLP00000034713	Cystathionase (cystathionine gamma-lyase), like.	Kynurenine aminotransferase 1.	0.919
ENSNMLP00000004134	ENSNMLP00000039735	ENSNMLP00000004134	ENSNMLP00000039735	Cystathionase (cystathionine gamma-lyase), like.	annotation not available	0.996
ENSNMLP00000004134	ENSNMLP00000039853	ENSNMLP00000004134	ENSNMLP00000039853	Cystathionase (cystathionine gamma-lyase), like.	annotation not available	0.907
ENSNMLP00000004134	ENSNMLP00000041952	ENSNMLP00000004134	ENSNMLP00000041952	Cystathionase (cystathionine gamma-lyase), like.	Methylenetetrahydrofolate reductase (NAD(P)H).	0.996
ENSNMLP00000004134	SDS	ENSNMLP00000004134	ENSNMLP00000044046	Cystathionase (cystathionine gamma-lyase), like.	Serine dehydratase.	0.907
ENSNMLP00000006114	ENSNMLP00000004134	ENSNMLP00000006114	ENSNMLP00000004134	Kynurenine aminotransferase 3.	Cystathionase (cystathionine gamma-lyase), like.	0.919
ENSNMLP00000006114	ENSNMLP00000017811	ENSNMLP00000006114	ENSNMLP00000017811	Kynurenine aminotransferase 3.	Adenosylhomocysteinase.	0.864
ENSNMLP00000006114	ENSNMLP00000020910	ENSNMLP00000006114	ENSNMLP00000020910	Kynurenine aminotransferase 3.	annotation not available	0.870
ENSNMLP00000006114	ENSNMLP00000027957	ENSNMLP00000006114	ENSNMLP00000027957	Kynurenine aminotransferase 3.	Zgc:172121.	0.856
ENSNMLP00000006114	ENSNMLP00000028028	ENSNMLP00000006114	ENSNMLP00000028028	Kynurenine aminotransferase 3.	Adenosylhomocysteinase-like 1.	0.823
ENSNMLP00000006114	ENSNMLP00000034713	ENSNMLP00000006114	ENSNMLP00000034713	Kynurenine aminotransferase 3.	Kynurenine aminotransferase 1.	0.840
ENSNMLP00000006114	ENSNMLP00000039735	ENSNMLP00000006114	ENSNMLP00000039735	Kynurenine aminotransferase 3.	annotation not available	0.870
ENSNMLP00000006114	ENSNMLP00000039853	ENSNMLP00000006114	ENSNMLP00000039853	Kynurenine aminotransferase 3.	annotation not available	0.857
ENSNMLP00000006114	ENSNMLP00000041952	ENSNMLP00000006114	ENSNMLP00000041952	Kynurenine aminotransferase 3.	Methylenetetrahydrofolate reductase (NAD(P)H).	0.749
ENSNMLP00000006114	SDS	ENSNMLP00000006114	ENSNMLP00000044046	Kynurenine aminotransferase 3.	Serine dehydratase.	0.857