ENSNMLP00000028448 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000028448

Progesterone immunomodulatory binding factor 1. (502 aa)

Predicted Functional Partners:

ENSNMLP00000007714

0.894

ENSNMLP00000027248

0.662

ENSNMLP00000027241

0.659

ENSNMLP00000025114

0.626

ENSNMLP00000020568

0.616

ENSNMLP00000003669

0.599

ENSNMLP00000007194

0.589

ENSNMLP00000014795

0.546

ENSNMLP00000026029

0.539

ENSNMLP00000033049

0.539

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003669	ENSNMLP00000007194	annotation not available	TBC1 domain family, member 31.	0.576
ENSNMLP00000003669	ENSNMLP00000020568	annotation not available	Fgfr1op N-terminal like.	0.525
ENSNMLP00000003669	ENSNMLP00000026029	annotation not available	annotation not available	0.538
ENSNMLP00000003669	ENSNMLP00000028448	annotation not available	Progesterone immunomodulatory binding factor 1.	0.599
ENSNMLP00000007194	ENSNMLP00000003669	TBC1 domain family, member 31.	annotation not available	0.576
ENSNMLP00000007194	ENSNMLP00000014795	TBC1 domain family, member 31.	Aurora kinase A.	0.541
ENSNMLP00000007194	ENSNMLP00000020568	TBC1 domain family, member 31.	Fgfr1op N-terminal like.	0.574
ENSNMLP00000007194	ENSNMLP00000026029	TBC1 domain family, member 31.	annotation not available	0.539
ENSNMLP00000007194	ENSNMLP00000028448	TBC1 domain family, member 31.	Progesterone immunomodulatory binding factor 1.	0.589
ENSNMLP00000007714	ENSNMLP00000028448	Malate synthase-like.	Progesterone immunomodulatory binding factor 1.	0.894
ENSNMLP00000014795	ENSNMLP00000007194	Aurora kinase A.	TBC1 domain family, member 31.	0.541
ENSNMLP00000014795	ENSNMLP00000027248	Aurora kinase A.	Bora aurora kinase A activator.	0.929
ENSNMLP00000014795	ENSNMLP00000028448	Aurora kinase A.	Progesterone immunomodulatory binding factor 1.	0.546
ENSNMLP00000020568	ENSNMLP00000003669	Fgfr1op N-terminal like.	annotation not available	0.525
ENSNMLP00000020568	ENSNMLP00000007194	Fgfr1op N-terminal like.	TBC1 domain family, member 31.	0.574
ENSNMLP00000020568	ENSNMLP00000026029	Fgfr1op N-terminal like.	annotation not available	0.555
ENSNMLP00000020568	ENSNMLP00000028448	Fgfr1op N-terminal like.	Progesterone immunomodulatory binding factor 1.	0.616
ENSNMLP00000025114	ENSNMLP00000028448	Thioredoxin domain containing 12 (endoplasmic reticulum).	Progesterone immunomodulatory binding factor 1.	0.626
ENSNMLP00000025114	ENSNMLP00000033049	Thioredoxin domain containing 12 (endoplasmic reticulum).	annotation not available	0.449
ENSNMLP00000026029	ENSNMLP00000003669	annotation not available	annotation not available	0.538