ENSNMLP00000028518 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000028518

Muscle-specific beta 1 integrin binding protein. (201 aa)

Predicted Functional Partners:

ENSNMLP00000013206

0.905

ENSNMLP00000045093

0.884

ENSNMLP00000003100

0.883

ENSNMLP00000010135

0.883

ENSNMLP00000042449

0.883

ENSNMLP00000042450

0.883

ENSNMLP00000038367

0.855

ENSNMLP00000029992

0.853

ENSNMLP00000015591

0.844

ENSNMLP00000033302

0.844

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003100	ENSNMLP00000010135	Wu:fi36a10.	annotation not available	0.878
ENSNMLP00000003100	ENSNMLP00000028518	Wu:fi36a10.	Muscle-specific beta 1 integrin binding protein.	0.883
ENSNMLP00000003100	ENSNMLP00000042449	Wu:fi36a10.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.863
ENSNMLP00000003100	ENSNMLP00000042450	Wu:fi36a10.	annotation not available	0.862
ENSNMLP00000010135	ENSNMLP00000003100	annotation not available	Wu:fi36a10.	0.878
ENSNMLP00000010135	ENSNMLP00000028518	annotation not available	Muscle-specific beta 1 integrin binding protein.	0.883
ENSNMLP00000010135	ENSNMLP00000042449	annotation not available	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.884
ENSNMLP00000010135	ENSNMLP00000042450	annotation not available	annotation not available	0.878
ENSNMLP00000013206	ENSNMLP00000015591	Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).	Purine nucleoside phosphorylase 6.	0.894
ENSNMLP00000013206	ENSNMLP00000028518	Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).	Muscle-specific beta 1 integrin binding protein.	0.905
ENSNMLP00000013206	ENSNMLP00000033302	Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).	annotation not available	0.894
ENSNMLP00000015591	ENSNMLP00000013206	Purine nucleoside phosphorylase 6.	Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).	0.894
ENSNMLP00000015591	ENSNMLP00000028518	Purine nucleoside phosphorylase 6.	Muscle-specific beta 1 integrin binding protein.	0.844
ENSNMLP00000015591	ENSNMLP00000033302	Purine nucleoside phosphorylase 6.	annotation not available	0.840
ENSNMLP00000015591	ENSNMLP00000045093	Purine nucleoside phosphorylase 6.	Nicotinate phosphoribosyltransferase.	0.883
ENSNMLP00000028518	ENSNMLP00000003100	Muscle-specific beta 1 integrin binding protein.	Wu:fi36a10.	0.883
ENSNMLP00000028518	ENSNMLP00000010135	Muscle-specific beta 1 integrin binding protein.	annotation not available	0.883
ENSNMLP00000028518	ENSNMLP00000013206	Muscle-specific beta 1 integrin binding protein.	Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).	0.905
ENSNMLP00000028518	ENSNMLP00000015591	Muscle-specific beta 1 integrin binding protein.	Purine nucleoside phosphorylase 6.	0.844
ENSNMLP00000028518	ENSNMLP00000029992	Muscle-specific beta 1 integrin binding protein.	Nudix (nucleoside diphosphate linked moiety X)-type motif 12.	0.853