DPF2 protein (Neogobius melanostomus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DPF2

Double PHD fingers 2. (403 aa)

Predicted Functional Partners:

ENSNMLP00000023135

0.938

ENSNMLP00000032257

0.925

ENSNMLP00000042030

0.925

ENSNMLP00000002357

0.908

ENSNMLP00000004764

0.907

ENSNMLP00000013280

0.890

ENSNMLP00000003308

0.888

SMARCB1

0.877

ENSNMLP00000041632

0.877

ENSNMLP00000010378

0.867

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DPF2	ENSNMLP00000002357	ENSNMLP00000031046	ENSNMLP00000002357	Double PHD fingers 2.	Actin-like 6A.	0.908
DPF2	ENSNMLP00000003308	ENSNMLP00000031046	ENSNMLP00000003308	Double PHD fingers 2.	annotation not available	0.888
DPF2	ENSNMLP00000004764	ENSNMLP00000031046	ENSNMLP00000004764	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.907
DPF2	ENSNMLP00000010378	ENSNMLP00000031046	ENSNMLP00000010378	Double PHD fingers 2.	AT rich interactive domain 1Aa (SWI-like).	0.867
DPF2	ENSNMLP00000013280	ENSNMLP00000031046	ENSNMLP00000013280	Double PHD fingers 2.	Bromodomain containing 7.	0.890
DPF2	ENSNMLP00000023135	ENSNMLP00000031046	ENSNMLP00000023135	Double PHD fingers 2.	annotation not available	0.938
DPF2	ENSNMLP00000032257	ENSNMLP00000031046	ENSNMLP00000032257	Double PHD fingers 2.	AT rich interactive domain 2 (ARID, RFX-like).	0.925
DPF2	ENSNMLP00000041632	ENSNMLP00000031046	ENSNMLP00000041632	Double PHD fingers 2.	annotation not available	0.877
DPF2	ENSNMLP00000042030	ENSNMLP00000031046	ENSNMLP00000042030	Double PHD fingers 2.	Polybromo 1, like.	0.925
DPF2	SMARCB1	ENSNMLP00000031046	ENSNMLP00000029128	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.877
ENSNMLP00000002357	DPF2	ENSNMLP00000002357	ENSNMLP00000031046	Actin-like 6A.	Double PHD fingers 2.	0.908
ENSNMLP00000002357	ENSNMLP00000003308	ENSNMLP00000002357	ENSNMLP00000003308	Actin-like 6A.	annotation not available	0.976
ENSNMLP00000002357	ENSNMLP00000004764	ENSNMLP00000002357	ENSNMLP00000004764	Actin-like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.990
ENSNMLP00000002357	ENSNMLP00000010378	ENSNMLP00000002357	ENSNMLP00000010378	Actin-like 6A.	AT rich interactive domain 1Aa (SWI-like).	0.976
ENSNMLP00000002357	ENSNMLP00000013280	ENSNMLP00000002357	ENSNMLP00000013280	Actin-like 6A.	Bromodomain containing 7.	0.990
ENSNMLP00000002357	ENSNMLP00000023135	ENSNMLP00000002357	ENSNMLP00000023135	Actin-like 6A.	annotation not available	0.994
ENSNMLP00000002357	ENSNMLP00000032257	ENSNMLP00000002357	ENSNMLP00000032257	Actin-like 6A.	AT rich interactive domain 2 (ARID, RFX-like).	0.986
ENSNMLP00000002357	ENSNMLP00000041632	ENSNMLP00000002357	ENSNMLP00000041632	Actin-like 6A.	annotation not available	0.992
ENSNMLP00000002357	ENSNMLP00000042030	ENSNMLP00000002357	ENSNMLP00000042030	Actin-like 6A.	Polybromo 1, like.	0.995
ENSNMLP00000002357	SMARCB1	ENSNMLP00000002357	ENSNMLP00000029128	Actin-like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.992