STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000032086Protein tyrosine phosphatase 4A1. (184 aa)    
Predicted Functional Partners:
ENSNMLP00000019856
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.830
ENSNMLP00000005217
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.812
ENSNMLP00000023281
Rab geranylgeranyltransferase subunit beta.
    
 0.737
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
 0.737
ENSNMLP00000024946
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.655
ENSNMLP00000024954
annotation not available
    
 
 0.655
ENSNMLP00000038800
Cyclin and CBS domain divalent metal cation transport mediator 4b.
    
 
 0.655
ENSNMLP00000039557
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.655
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.649
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.649
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.