ENSNMLP00000033943 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000033943

annotation not available (100 aa)

Predicted Functional Partners:

ENSNMLP00000017736

0.783

ENSNMLP00000014874

0.768

ENSNMLP00000016193

0.768

ENSNMLP00000014576

0.707

ENSNMLP00000028837

0.707

ENSNMLP00000024316

0.587

ENSNMLP00000034705

0.586

ENSNMLP00000013426

0.568

ENSNMLP00000005511

0.541

ENSNMLP00000039191

0.537

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000005511	ENSNMLP00000014576	annotation not available	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.707
ENSNMLP00000005511	ENSNMLP00000024316	annotation not available	Radial spoke head component 9.	0.531
ENSNMLP00000005511	ENSNMLP00000028837	annotation not available	annotation not available	0.707
ENSNMLP00000005511	ENSNMLP00000033943	annotation not available	annotation not available	0.541
ENSNMLP00000005511	ENSNMLP00000039191	annotation not available	Dynein, axonemal, light intermediate chain 1.	0.405
ENSNMLP00000013426	ENSNMLP00000014576	Cilia and flagella associated protein 52.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.439
ENSNMLP00000013426	ENSNMLP00000014874	Cilia and flagella associated protein 52.	EF-hand calcium binding domain 1.	0.728
ENSNMLP00000013426	ENSNMLP00000016193	Cilia and flagella associated protein 52.	annotation not available	0.728
ENSNMLP00000013426	ENSNMLP00000024316	Cilia and flagella associated protein 52.	Radial spoke head component 9.	0.500
ENSNMLP00000013426	ENSNMLP00000028837	Cilia and flagella associated protein 52.	annotation not available	0.439
ENSNMLP00000013426	ENSNMLP00000033943	Cilia and flagella associated protein 52.	annotation not available	0.568
ENSNMLP00000013426	ENSNMLP00000034705	Cilia and flagella associated protein 52.	Meiosis-specific nuclear structural 1.	0.883
ENSNMLP00000013426	ENSNMLP00000039191	Cilia and flagella associated protein 52.	Dynein, axonemal, light intermediate chain 1.	0.516
ENSNMLP00000014576	ENSNMLP00000005511	RAB guanine nucleotide exchange factor (GEF) 1, like.	annotation not available	0.707
ENSNMLP00000014576	ENSNMLP00000013426	RAB guanine nucleotide exchange factor (GEF) 1, like.	Cilia and flagella associated protein 52.	0.439
ENSNMLP00000014576	ENSNMLP00000017736	RAB guanine nucleotide exchange factor (GEF) 1, like.	MORN repeat containing 3.	0.707
ENSNMLP00000014576	ENSNMLP00000028837	RAB guanine nucleotide exchange factor (GEF) 1, like.	annotation not available	0.696
ENSNMLP00000014576	ENSNMLP00000033943	RAB guanine nucleotide exchange factor (GEF) 1, like.	annotation not available	0.707
ENSNMLP00000014874	ENSNMLP00000013426	EF-hand calcium binding domain 1.	Cilia and flagella associated protein 52.	0.728
ENSNMLP00000014874	ENSNMLP00000033943	EF-hand calcium binding domain 1.	annotation not available	0.768