ENSNMLP00000035104 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000035104

TBC1 domain family, member 19. (527 aa)

Predicted Functional Partners:

ENSNMLP00000037622

0.771

ENSNMLP00000021236

0.713

ENSNMLP00000041263

0.704

ENSNMLP00000036813

0.527

ENSNMLP00000002990

0.507

CCKAR

0.499

ENSNMLP00000021694

0.493

ENSNMLP00000035916

0.493

ENSNMLP00000009250

0.487

ENSNMLP00000004901

0.485

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCKAR	ENSNMLP00000035104	ENSNMLP00000034953	ENSNMLP00000035104	Cholecystokinin A receptor.	TBC1 domain family, member 19.	0.499
ENSNMLP00000002990	ENSNMLP00000004901	ENSNMLP00000002990	ENSNMLP00000004901	TBC1 domain family, member 7.	Ecotropic viral integration site 5b.	0.533
ENSNMLP00000002990	ENSNMLP00000035104	ENSNMLP00000002990	ENSNMLP00000035104	TBC1 domain family, member 7.	TBC1 domain family, member 19.	0.507
ENSNMLP00000004901	ENSNMLP00000002990	ENSNMLP00000004901	ENSNMLP00000002990	Ecotropic viral integration site 5b.	TBC1 domain family, member 7.	0.533
ENSNMLP00000004901	ENSNMLP00000035104	ENSNMLP00000004901	ENSNMLP00000035104	Ecotropic viral integration site 5b.	TBC1 domain family, member 19.	0.485
ENSNMLP00000009250	ENSNMLP00000035104	ENSNMLP00000009250	ENSNMLP00000035104	TBC1 domain family, member 2B.	TBC1 domain family, member 19.	0.487
ENSNMLP00000021236	ENSNMLP00000035104	ENSNMLP00000021236	ENSNMLP00000035104	Tubulin tyrosine ligase.	TBC1 domain family, member 19.	0.713
ENSNMLP00000021236	ENSNMLP00000035916	ENSNMLP00000021236	ENSNMLP00000035916	Tubulin tyrosine ligase.	annotation not available	0.860
ENSNMLP00000021236	ENSNMLP00000036813	ENSNMLP00000021236	ENSNMLP00000036813	Tubulin tyrosine ligase.	Chromosome 11 open reading frame 49.	0.697
ENSNMLP00000021236	ENSNMLP00000037622	ENSNMLP00000021236	ENSNMLP00000037622	Tubulin tyrosine ligase.	Nicolin 1.	0.862
ENSNMLP00000021236	ENSNMLP00000041263	ENSNMLP00000021236	ENSNMLP00000041263	Tubulin tyrosine ligase.	annotation not available	0.876
ENSNMLP00000021694	ENSNMLP00000035104	ENSNMLP00000021694	ENSNMLP00000035104	annotation not available	TBC1 domain family, member 19.	0.493
ENSNMLP00000035104	CCKAR	ENSNMLP00000035104	ENSNMLP00000034953	TBC1 domain family, member 19.	Cholecystokinin A receptor.	0.499
ENSNMLP00000035104	ENSNMLP00000002990	ENSNMLP00000035104	ENSNMLP00000002990	TBC1 domain family, member 19.	TBC1 domain family, member 7.	0.507
ENSNMLP00000035104	ENSNMLP00000004901	ENSNMLP00000035104	ENSNMLP00000004901	TBC1 domain family, member 19.	Ecotropic viral integration site 5b.	0.485
ENSNMLP00000035104	ENSNMLP00000009250	ENSNMLP00000035104	ENSNMLP00000009250	TBC1 domain family, member 19.	TBC1 domain family, member 2B.	0.487
ENSNMLP00000035104	ENSNMLP00000021236	ENSNMLP00000035104	ENSNMLP00000021236	TBC1 domain family, member 19.	Tubulin tyrosine ligase.	0.713
ENSNMLP00000035104	ENSNMLP00000021694	ENSNMLP00000035104	ENSNMLP00000021694	TBC1 domain family, member 19.	annotation not available	0.493
ENSNMLP00000035104	ENSNMLP00000035916	ENSNMLP00000035104	ENSNMLP00000035916	TBC1 domain family, member 19.	annotation not available	0.493
ENSNMLP00000035104	ENSNMLP00000036813	ENSNMLP00000035104	ENSNMLP00000036813	TBC1 domain family, member 19.	Chromosome 11 open reading frame 49.	0.527