STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNMLP00000035410UBA domain containing 1. (417 aa)    
Predicted Functional Partners:
ENSNMLP00000001079
Ribosomal protein S27a.
    
 0.731
ENSNMLP00000042046
Ubiquitin-like 7b (bone marrow stromal cell-derived).
    
 0.686
ENSNMLP00000000414
Zinc finger, AN1-type domain 4.
    
 0.615
ENSNMLP00000021606
Ubiquilin 4.
    
 0.552
ENSNMLP00000033431
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.537
ENSNMLP00000023897
annotation not available
    
 
 0.527
ENSNMLP00000036231
Peptidase (mitochondrial processing) alpha.
   
  
 0.524
ENSNMLP00000018525
UTP6 small subunit processome component.
    
   0.521
ENSNMLP00000007473
annotation not available
      
 0.516
ENSNMLP00000041679
Ubiquitin-like modifier activating enzyme 5.
     
 0.514
Your Current Organism:
Neogobius melanostomus
NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.