ENSNMLP00000035892 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000035892

ER membrane protein complex subunit 7. (241 aa)

Predicted Functional Partners:

ENSNMLP00000000225

0.997

ENSNMLP00000003192

0.995

ENSNMLP00000008823

0.995

ENSNMLP00000001929

0.994

ENSNMLP00000006578

0.994

ENSNMLP00000009784

0.994

ENSNMLP00000010979

0.994

ENSNMLP00000004838

0.991

ENSNMLP00000029084

0.991

ENSNMLP00000007183

0.960

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000225	ENSNMLP00000001929	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 6.	0.997
ENSNMLP00000000225	ENSNMLP00000003192	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 10.	0.995
ENSNMLP00000000225	ENSNMLP00000004838	ER membrane protein complex subunit 4.	annotation not available	0.994
ENSNMLP00000000225	ENSNMLP00000006578	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 8.	0.994
ENSNMLP00000000225	ENSNMLP00000007183	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 9.	0.974
ENSNMLP00000000225	ENSNMLP00000008823	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 1.	0.998
ENSNMLP00000000225	ENSNMLP00000009784	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 2.	0.999
ENSNMLP00000000225	ENSNMLP00000010979	ER membrane protein complex subunit 4.	Membrane magnesium transporter 1.	0.996
ENSNMLP00000000225	ENSNMLP00000029084	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 3.	0.994
ENSNMLP00000000225	ENSNMLP00000035892	ER membrane protein complex subunit 4.	ER membrane protein complex subunit 7.	0.997
ENSNMLP00000001929	ENSNMLP00000000225	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 4.	0.997
ENSNMLP00000001929	ENSNMLP00000003192	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 10.	0.994
ENSNMLP00000001929	ENSNMLP00000004838	ER membrane protein complex subunit 6.	annotation not available	0.991
ENSNMLP00000001929	ENSNMLP00000006578	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 8.	0.995
ENSNMLP00000001929	ENSNMLP00000007183	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 9.	0.961
ENSNMLP00000001929	ENSNMLP00000008823	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 1.	0.995
ENSNMLP00000001929	ENSNMLP00000009784	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 2.	0.999
ENSNMLP00000001929	ENSNMLP00000010979	ER membrane protein complex subunit 6.	Membrane magnesium transporter 1.	0.996
ENSNMLP00000001929	ENSNMLP00000029084	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 3.	0.991
ENSNMLP00000001929	ENSNMLP00000035892	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 7.	0.994