ENSNMLP00000035922 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000035922

Cellular retinoic acid binding protein 1a. (170 aa)

Predicted Functional Partners:

ENSNMLP00000031370

0.619

ENSNMLP00000038469

0.586

FABP6

0.574

ENSNMLP00000028240

0.536

ENSNMLP00000028708

0.512

ENSNMLP00000029095

0.506

ENSNMLP00000001090

0.505

ENSNMLP00000014919

0.484

ENSNMLP00000019680

0.484

ENSNMLP00000024058

0.458

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000001090	ENSNMLP00000014919	ENSNMLP00000001090	ENSNMLP00000014919	Fatty acid binding protein 10b, liver basic.	annotation not available	0.426
ENSNMLP00000001090	ENSNMLP00000019680	ENSNMLP00000001090	ENSNMLP00000019680	Fatty acid binding protein 10b, liver basic.	Lipase, hormone-sensitive b.	0.426
ENSNMLP00000001090	ENSNMLP00000024058	ENSNMLP00000001090	ENSNMLP00000024058	Fatty acid binding protein 10b, liver basic.	5'-nucleotidase, ecto (CD73).	0.458
ENSNMLP00000001090	ENSNMLP00000028708	ENSNMLP00000001090	ENSNMLP00000028708	Fatty acid binding protein 10b, liver basic.	Fatty acid binding protein 2, intestinal.	0.848
ENSNMLP00000001090	ENSNMLP00000029095	ENSNMLP00000001090	ENSNMLP00000029095	Fatty acid binding protein 10b, liver basic.	annotation not available	0.848
ENSNMLP00000001090	ENSNMLP00000035922	ENSNMLP00000001090	ENSNMLP00000035922	Fatty acid binding protein 10b, liver basic.	Cellular retinoic acid binding protein 1a.	0.505
ENSNMLP00000001090	ENSNMLP00000038469	ENSNMLP00000001090	ENSNMLP00000038469	Fatty acid binding protein 10b, liver basic.	Fatty acid binding protein 1b, tandem duplicate 1.	0.891
ENSNMLP00000014919	ENSNMLP00000001090	ENSNMLP00000014919	ENSNMLP00000001090	annotation not available	Fatty acid binding protein 10b, liver basic.	0.426
ENSNMLP00000014919	ENSNMLP00000019680	ENSNMLP00000014919	ENSNMLP00000019680	annotation not available	Lipase, hormone-sensitive b.	0.840
ENSNMLP00000014919	ENSNMLP00000028708	ENSNMLP00000014919	ENSNMLP00000028708	annotation not available	Fatty acid binding protein 2, intestinal.	0.518
ENSNMLP00000014919	ENSNMLP00000029095	ENSNMLP00000014919	ENSNMLP00000029095	annotation not available	annotation not available	0.518
ENSNMLP00000014919	ENSNMLP00000031370	ENSNMLP00000014919	ENSNMLP00000031370	annotation not available	Fatty acid binding protein 6, ileal (gastrotropin).	0.428
ENSNMLP00000014919	ENSNMLP00000035922	ENSNMLP00000014919	ENSNMLP00000035922	annotation not available	Cellular retinoic acid binding protein 1a.	0.484
ENSNMLP00000014919	ENSNMLP00000038469	ENSNMLP00000014919	ENSNMLP00000038469	annotation not available	Fatty acid binding protein 1b, tandem duplicate 1.	0.432
ENSNMLP00000014919	FABP6	ENSNMLP00000014919	ENSNMLP00000042587	annotation not available	Fatty acid binding protein 6.	0.426
ENSNMLP00000019680	ENSNMLP00000001090	ENSNMLP00000019680	ENSNMLP00000001090	Lipase, hormone-sensitive b.	Fatty acid binding protein 10b, liver basic.	0.426
ENSNMLP00000019680	ENSNMLP00000014919	ENSNMLP00000019680	ENSNMLP00000014919	Lipase, hormone-sensitive b.	annotation not available	0.840
ENSNMLP00000019680	ENSNMLP00000028708	ENSNMLP00000019680	ENSNMLP00000028708	Lipase, hormone-sensitive b.	Fatty acid binding protein 2, intestinal.	0.518
ENSNMLP00000019680	ENSNMLP00000029095	ENSNMLP00000019680	ENSNMLP00000029095	Lipase, hormone-sensitive b.	annotation not available	0.518
ENSNMLP00000019680	ENSNMLP00000031370	ENSNMLP00000019680	ENSNMLP00000031370	Lipase, hormone-sensitive b.	Fatty acid binding protein 6, ileal (gastrotropin).	0.428