ENSNMLP00000035973 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000035973

Procollagen C-endopeptidase enhancer b. (532 aa)

Predicted Functional Partners:

ENSNMLP00000025372

0.933

ENSNMLP00000001459

0.748

ENSNMLP00000018663

0.748

ENSNMLP00000019151

0.671

ENSNMLP00000026996

0.671

ENSNMLP00000040985

0.671

ENSNMLP00000040993

0.671

ENSNMLP00000013577

0.670

ENSNMLP00000020457

0.670

ENSNMLP00000034188

0.664

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001459	ENSNMLP00000013577	annotation not available	enoyl-CoA delta isomerase 2.	0.637
ENSNMLP00000001459	ENSNMLP00000019151	annotation not available	Zgc:101569.	0.621
ENSNMLP00000001459	ENSNMLP00000020457	annotation not available	enoyl-CoA delta isomerase 2.	0.637
ENSNMLP00000001459	ENSNMLP00000026996	annotation not available	Enoyl CoA hydratase, short chain, 1, mitochondrial.	0.621
ENSNMLP00000001459	ENSNMLP00000035973	annotation not available	Procollagen C-endopeptidase enhancer b.	0.748
ENSNMLP00000001459	ENSNMLP00000040985	annotation not available	annotation not available	0.621
ENSNMLP00000001459	ENSNMLP00000040993	annotation not available	annotation not available	0.621
ENSNMLP00000013577	ENSNMLP00000001459	enoyl-CoA delta isomerase 2.	annotation not available	0.637
ENSNMLP00000013577	ENSNMLP00000018663	enoyl-CoA delta isomerase 2.	Ferredoxin 2.	0.637
ENSNMLP00000013577	ENSNMLP00000019151	enoyl-CoA delta isomerase 2.	Zgc:101569.	0.584
ENSNMLP00000013577	ENSNMLP00000020457	enoyl-CoA delta isomerase 2.	enoyl-CoA delta isomerase 2.	0.888
ENSNMLP00000013577	ENSNMLP00000026996	enoyl-CoA delta isomerase 2.	Enoyl CoA hydratase, short chain, 1, mitochondrial.	0.496
ENSNMLP00000013577	ENSNMLP00000034188	enoyl-CoA delta isomerase 2.	Malonyl CoA:ACP acyltransferase (mitochondrial).	0.583
ENSNMLP00000013577	ENSNMLP00000035973	enoyl-CoA delta isomerase 2.	Procollagen C-endopeptidase enhancer b.	0.670
ENSNMLP00000013577	ENSNMLP00000040985	enoyl-CoA delta isomerase 2.	annotation not available	0.428
ENSNMLP00000013577	ENSNMLP00000040993	enoyl-CoA delta isomerase 2.	annotation not available	0.428
ENSNMLP00000018663	ENSNMLP00000013577	Ferredoxin 2.	enoyl-CoA delta isomerase 2.	0.637
ENSNMLP00000018663	ENSNMLP00000019151	Ferredoxin 2.	Zgc:101569.	0.621
ENSNMLP00000018663	ENSNMLP00000020457	Ferredoxin 2.	enoyl-CoA delta isomerase 2.	0.637
ENSNMLP00000018663	ENSNMLP00000026996	Ferredoxin 2.	Enoyl CoA hydratase, short chain, 1, mitochondrial.	0.621