ENSNMLP00000036082 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000036082

annotation not available (448 aa)

Predicted Functional Partners:

ENSNMLP00000029743

0.867

ENSNMLP00000015936

0.767

ENSNMLP00000012603

0.669

ENSNMLP00000014005

0.545

ENSNMLP00000019951

0.489

ENSNMLP00000040191

0.480

ENSNMLP00000011444

0.464

ENSNMLP00000020112

0.464

ENSNMLP00000022563

0.464

ENSNMLP00000027198

0.464

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000011444	ENSNMLP00000012603	Catenin (cadherin-associated protein), alpha-like 1.	annotation not available	0.789
ENSNMLP00000011444	ENSNMLP00000015936	Catenin (cadherin-associated protein), alpha-like 1.	annotation not available	0.464
ENSNMLP00000011444	ENSNMLP00000022563	Catenin (cadherin-associated protein), alpha-like 1.	Vinculin b.	0.489
ENSNMLP00000011444	ENSNMLP00000029743	Catenin (cadherin-associated protein), alpha-like 1.	annotation not available	0.791
ENSNMLP00000011444	ENSNMLP00000036082	Catenin (cadherin-associated protein), alpha-like 1.	annotation not available	0.464
ENSNMLP00000012603	ENSNMLP00000011444	annotation not available	Catenin (cadherin-associated protein), alpha-like 1.	0.789
ENSNMLP00000012603	ENSNMLP00000014005	annotation not available	Four-jointed box kinase 1.	0.965
ENSNMLP00000012603	ENSNMLP00000015936	annotation not available	annotation not available	0.407
ENSNMLP00000012603	ENSNMLP00000019951	annotation not available	annotation not available	0.406
ENSNMLP00000012603	ENSNMLP00000020112	annotation not available	Catenin (cadherin-associated protein), alpha 1.	0.789
ENSNMLP00000012603	ENSNMLP00000022563	annotation not available	Vinculin b.	0.789
ENSNMLP00000012603	ENSNMLP00000027198	annotation not available	Catenin (cadherin-associated protein), alpha 2.	0.789
ENSNMLP00000012603	ENSNMLP00000029743	annotation not available	annotation not available	0.973
ENSNMLP00000012603	ENSNMLP00000036082	annotation not available	annotation not available	0.669
ENSNMLP00000012603	ENSNMLP00000040191	annotation not available	annotation not available	0.465
ENSNMLP00000014005	ENSNMLP00000012603	Four-jointed box kinase 1.	annotation not available	0.965
ENSNMLP00000014005	ENSNMLP00000015936	Four-jointed box kinase 1.	annotation not available	0.545
ENSNMLP00000014005	ENSNMLP00000019951	Four-jointed box kinase 1.	annotation not available	0.781
ENSNMLP00000014005	ENSNMLP00000029743	Four-jointed box kinase 1.	annotation not available	0.965
ENSNMLP00000014005	ENSNMLP00000036082	Four-jointed box kinase 1.	annotation not available	0.545