ENSNMLP00000038449 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000038449

Lipoxygenase homology domains 1b. (913 aa)

Predicted Functional Partners:

ENSNMLP00000012382

0.841

ENSNMLP00000042084

0.756

ENSNMLP00000006741

0.721

ENSNMLP00000007467

0.593

ENSNMLP00000028647

0.573

ENSNMLP00000023304

0.536

ENSNMLP00000024225

0.536

ENSNMLP00000012380

0.531

ENSNMLP00000016805

0.518

ENSNMLP00000006047

0.513

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000006047	ENSNMLP00000016805	Katanin p60 subunit A-like 2.	BRCA1 associated RING domain 1.	0.689
ENSNMLP00000006047	ENSNMLP00000028647	Katanin p60 subunit A-like 2.	EMAP like 1.	0.449
ENSNMLP00000006047	ENSNMLP00000038449	Katanin p60 subunit A-like 2.	Lipoxygenase homology domains 1b.	0.513
ENSNMLP00000006741	ENSNMLP00000012382	Solute carrier family 33 member 1.	annotation not available	0.495
ENSNMLP00000006741	ENSNMLP00000038449	Solute carrier family 33 member 1.	Lipoxygenase homology domains 1b.	0.721
ENSNMLP00000007467	ENSNMLP00000016805	annotation not available	BRCA1 associated RING domain 1.	0.474
ENSNMLP00000007467	ENSNMLP00000038449	annotation not available	Lipoxygenase homology domains 1b.	0.593
ENSNMLP00000007467	ENSNMLP00000042084	annotation not available	annotation not available	0.608
ENSNMLP00000012380	ENSNMLP00000012382	annotation not available	annotation not available	0.999
ENSNMLP00000012380	ENSNMLP00000028647	annotation not available	EMAP like 1.	0.414
ENSNMLP00000012380	ENSNMLP00000038449	annotation not available	Lipoxygenase homology domains 1b.	0.531
ENSNMLP00000012382	ENSNMLP00000006741	annotation not available	Solute carrier family 33 member 1.	0.495
ENSNMLP00000012382	ENSNMLP00000012380	annotation not available	annotation not available	0.999
ENSNMLP00000012382	ENSNMLP00000028647	annotation not available	EMAP like 1.	0.417
ENSNMLP00000012382	ENSNMLP00000038449	annotation not available	Lipoxygenase homology domains 1b.	0.841
ENSNMLP00000016805	ENSNMLP00000006047	BRCA1 associated RING domain 1.	Katanin p60 subunit A-like 2.	0.689
ENSNMLP00000016805	ENSNMLP00000007467	BRCA1 associated RING domain 1.	annotation not available	0.474
ENSNMLP00000016805	ENSNMLP00000028647	BRCA1 associated RING domain 1.	EMAP like 1.	0.636
ENSNMLP00000016805	ENSNMLP00000038449	BRCA1 associated RING domain 1.	Lipoxygenase homology domains 1b.	0.518
ENSNMLP00000023304	ENSNMLP00000038449	annotation not available	Lipoxygenase homology domains 1b.	0.536