ENSNMLP00000041002 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000041002

THADA armadillo repeat containing. (343 aa)

Predicted Functional Partners:

ENSNMLP00000010536

0.975

ENSNMLP00000000906

0.891

ENSNMLP00000002795

0.840

ENSNMLP00000041043

0.830

ENSNMLP00000000702

0.807

ENSNMLP00000004107

0.692

ENSNMLP00000004119

0.692

ENSNMLP00000017676

0.674

ENSNMLP00000020336

0.674

ENSNMLP00000021007

0.674

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000702	ENSNMLP00000000906	Major histocompatibility complex class I ZKA.	annotation not available	0.411
ENSNMLP00000000702	ENSNMLP00000017676	Major histocompatibility complex class I ZKA.	annotation not available	0.953
ENSNMLP00000000702	ENSNMLP00000020336	Major histocompatibility complex class I ZKA.	Replication protein A2.	0.938
ENSNMLP00000000702	ENSNMLP00000021007	Major histocompatibility complex class I ZKA.	annotation not available	0.938
ENSNMLP00000000702	ENSNMLP00000041002	Major histocompatibility complex class I ZKA.	THADA armadillo repeat containing.	0.807
ENSNMLP00000000906	ENSNMLP00000000702	annotation not available	Major histocompatibility complex class I ZKA.	0.411
ENSNMLP00000000906	ENSNMLP00000017676	annotation not available	annotation not available	0.979
ENSNMLP00000000906	ENSNMLP00000020336	annotation not available	Replication protein A2.	0.979
ENSNMLP00000000906	ENSNMLP00000021007	annotation not available	annotation not available	0.979
ENSNMLP00000000906	ENSNMLP00000041002	annotation not available	THADA armadillo repeat containing.	0.891
ENSNMLP00000002795	ENSNMLP00000004107	FtsJ RNA 2'-O-methyltransferase 3.	annotation not available	0.846
ENSNMLP00000002795	ENSNMLP00000004119	FtsJ RNA 2'-O-methyltransferase 3.	annotation not available	0.846
ENSNMLP00000002795	ENSNMLP00000041002	FtsJ RNA 2'-O-methyltransferase 3.	THADA armadillo repeat containing.	0.840
ENSNMLP00000004107	ENSNMLP00000002795	annotation not available	FtsJ RNA 2'-O-methyltransferase 3.	0.846
ENSNMLP00000004107	ENSNMLP00000004119	annotation not available	annotation not available	0.413
ENSNMLP00000004107	ENSNMLP00000010536	annotation not available	FtsJ RNA 2'-O-methyltransferase 1.	0.964
ENSNMLP00000004107	ENSNMLP00000041002	annotation not available	THADA armadillo repeat containing.	0.692
ENSNMLP00000004107	ENSNMLP00000041043	annotation not available	Mitochondrial rRNA methyltransferase 2.	0.894
ENSNMLP00000004119	ENSNMLP00000002795	annotation not available	FtsJ RNA 2'-O-methyltransferase 3.	0.846
ENSNMLP00000004119	ENSNMLP00000004107	annotation not available	annotation not available	0.413